New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 825054	50 (0.610)	12 (0.160)	9/164	NT	18.6%	coding (1055/1107 nt)	ybhR	putative ABC transporter permease
	?	NC_000913	= 825067	59 (0.790)					coding (1042/1107 nt)	ybhR	putative ABC transporter permease

CAATCCTTGCCGGCCCGGCGGTAGTGTCTTTGCTGGCGAAAGATAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/824952‑825054 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggccgCTACTGGTGATAACGGCCACGACAGGGTCAGCGGCGTACGCGATGTTTAGACGTAAGGTGATGTAACTTCTTATCTTTCGCCAGCAAAGACACTACC  <  NC_000913/825067‑824971                                                                                                                                                                                                          CAATCCTTGCCGGCCCGGCGGTAGTGTCTTTGCTGGCGAAAGATAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGG                                                                                                      <  1:960560/100‑1  AATCCTTGCCGGCCCGGCGGTAGTGTCTTTGCTGGCGAAAGATAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGC                                                                                                     <  2:1257916/100‑1   ATCCTTGCCGGCCCGGCGGTAGTGTCTTTGCTGGCGAAAGATAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCC                                                                                                    >  2:1630845/1‑100    TCCTTGTCGGTTCGGCGGTAGTGTCTTTGCTGGCGAAAGATAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCACTGACCCTGTCGTGGCCG                                                                                                   <  1:53244/100‑1    TCCTTGCCGGCCCGGCGGTAGTGTCTTTGCTGGCGAAAGATAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCG                                                                                                   <  2:70498/100‑1      CTTGCCGGCCCGGTGGTAGTGTCTTTGCTGGCGAAAGATAAGAAGTTACATCACCTTACGTCTAAACATCTCTTACGCCGCTGACCCTGTAGTGGGCG                                                                                                   <  2:374012/98‑1              CCCGGCGGTAGTGTCTTTGCTGGCGAAAGATAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGCTACTGGTGA                                                                                         >  2:1063977/1‑100                      TAGTGTCTTTGCTGGCGAAAGATAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGCTACTGGTGATAACGGCC                                                                                 <  1:2053322/100‑1                        GTGTCTTTGCTGGCGAAAGATAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGCTACTGGTGATAACGGCCAC                                                                               <  1:1507565/100‑1                        GTGTCTTTGCTGGCGAAAGATAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGCTACTGGTGATAACGGCCAC                                                                               <  2:2203825/100‑1                        GTGTCTTTGCTGGCGAAAGATAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGCTACTGGTGATAACGGCCAC                                                                               <  2:1448239/100‑1                         TGTCTTTGCTGGCGAAAGATAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGCTACTGGTGATAACGGCCACG                                                                              <  1:1713764/100‑1                         TGTCTTTGCTGGCGAAAGATAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGCTACTGGTGATAACGGCCACG                                                                              <  1:507020/100‑1                           TCTTTGCTGGCGAAAGATAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGCTACTGGTGATAACGGCCACGAC                                                                            <  1:1115550/100‑1                            CTTTGCTGGCGAAAGATAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGCTACTGGTGATAACGGCCACGACA                                                                           <  1:1537380/100‑1                             TTTGCTGGCGAAAGATAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGCTACTGGTGATAACGGCCACGACAG                                                                          <  1:1063979/100‑1                               TGCTGGCGAAAGATAAGACGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGCTACTGGTGATAACGGCCACGACAGGG                                                                        <  2:697715/100‑1                                       AAAGATAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTTGTGGCCGCTACTGGTGATAACGGCCACGACAGGGTCAGCGGC                                                                <  2:986166/100‑1                                                                                                 GTGGCCGCTACTGGTGATAACGGCCACGACAGGGTCAGCGGCGTACGCGATGTTTAGACGTAAGGTGATGTAACTTCTTATCTTTCGCCAGCAAAGACAC      >  2:1012529/1‑100                                                                                                 GTGGCCGCTACTGGTGATAACGGCCACGACAGGGTCAGCGGCGTACGCGATGTTTAGACGTAAGGTGATGTAACTTCTTATCTTTCGCCAGCAAAGACAC      >  2:2020285/1‑100                                                                                                 GTGGCCGCTACTGGTGATAACGGCCACGACAGGGTCAGCGGCGTACGCGATGTTTAGACGTAAGGTGATGTAACTTCTTATCTTTCGCCAGCAAAGACAC      >  2:982576/1‑100                                                                                                  nGGCCGCTACTGGTGATAACGGCCACGACAGGGTCAGCGGCGTACGCGATGTTTAGACGTAAGGTGATGTAACTTCTTATCTTTCGCCAGCAAAGACACT     >  2:1686345/2‑100                                                                                                  TGGCCGCTACTGGTGATAACGGCCACGACAGGGTCAGCGGCGTACGCGATGTTTAGACGTAAGGTGATGTAACTTCTTATCTTTCGCCAGCAAAGACACT     >  2:788751/1‑100                                                                                                   GGCCGCTACTGGTGATAACGGCCACGACAGGGTCAGCGGCGTACGCGATGTTTAGACGTAAGGTGATGTAACTTCTTATCTTTCGCCAGCAAAGACACTA    >  1:765763/1‑100                                                                                                   GGCCGCTACTGGTGATAACGGCCACGACAGGGTCAGCGGCGTACGCGATGTTTAGACGTAAGGTGATGTAACTTCTTATCTTTCGCCAGCAAAGACACTA    >  1:1445261/1‑100                                                                                                   GGCCGCTACTGGTGATAACGGCCACGACAGGGTCAGCGGCGTACGCGATGTTTAGACGTAAGGTGATGTAACTTCTTATCTTTCGCCAGCAAAGACACTA    >  2:808000/1‑100                                                                                                     CCGCTAGTGGTGATAACGGCCACGACAGGGTCAGCGGCGTACGCGATGGTTAGACGTAAGGTGATGTAACTTCTTATCTTTCGCCAGCAAAGACACTACC  >  2:1538763/1‑100                                                                                                     CCGCTACTGGTGATAACGGCCACGACAGGGTCAGCGGCGTACGCGATGTTTAGACGTAAGGTGATGTAACTTCTTATCTTTCGCCAGCAAAGACACTACC  >  2:1973734/1‑100                                                                                                                                                                                                          CAATCCTTGCCGGCCCGGCGGTAGTGTCTTTGCTGGCGAAAGATAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/824952‑825054 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggccgCTACTGGTGATAACGGCCACGACAGGGTCAGCGGCGTACGCGATGTTTAGACGTAAGGTGATGTAACTTCTTATCTTTCGCCAGCAAAGACACTACC  <  NC_000913/825067‑824971

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.