| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 825054 | 50 (0.610) | 12 (0.160) | 9/164 | NT | 18.6% | coding (1055/1107 nt) | ybhR | putative ABC transporter permease |
| ? | NC_000913 | = 825067 | 59 (0.790) | coding (1042/1107 nt) | ybhR | putative ABC transporter permease | |||||
GCGGTAGTGTCTTTGCTGGCGAAAGATAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTC > NC_000913/824969‑825164 | gcggTAGTGTCTTTGTGGGTGGATGATAAGGGGTTACATCACTTTACGTCTAGACATGGGGTATGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAg < 2:927881/99‑1 (MQ=255) ggTAGTGTCTTTGCTGGCGAAAGATAAGAAGTTACATCACCTTACGTCTAACCATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCACTAGcgg > 2:1538763‑M2/1‑97 (MQ=255) ggTAGTGTCTTTGCTGGCGAAAGATAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGcgg > 2:1973734‑M2/1‑97 (MQ=255) tAGTGTCTTTGCTGGCGAAAGATAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGcggcc > 1:765763‑M2/1‑95 (MQ=255) tAGTGTCTTTGCTGGCGAAAGATAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGcggcc > 2:808000‑M2/1‑95 (MQ=255) tAGTGTCTTTGCTGGCGAAAGATAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGcggcc > 1:1445261‑M2/1‑95 (MQ=255) aGTGTCTTTGCTGGCGAAAGATAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGcggccn > 2:1686345‑M2/1‑94 (MQ=255) aGTGTCTTTGCTGGCGAAAGATAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGcggcca > 2:788751‑M2/1‑94 (MQ=255) gtgtCTTTGCTGGCGAAAGATAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGcggccac > 2:982576‑M2/1‑93 (MQ=255) gtgtCTTTGCTGGCGAAAGATAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGcggccac > 2:1012529‑M2/1‑93 (MQ=255) gtgtCTTTGCTGGCGAAAGATAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGcggccac > 2:2020285‑M2/1‑93 (MQ=255) tgtCTTTGCTGGCGAAAGATAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCcaca < 2:566809/100‑1 (MQ=255) tCTTTGCTGGCGAAAGATAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACaaa > 2:2193351/1‑100 (MQ=255) tGCTGGCGAAAGATAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTAt < 1:961182/100‑1 (MQ=255) gCTGGCGAAAGATAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTAtt > 1:943813/1‑100 (MQ=255) tGGCGAAAGATAAGAATTTACATCACCTTACGTCTAAACATCGAGTACGCCGCTGACCCTGTCGTGGCCGTTATTAACAGTAGCGGCCACAAACTAtt < 2:1984941/98‑1 (MQ=255) tGGCGAAAGATAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTcc > 1:1432724/1‑100 (MQ=255) tGGCGAAAGATAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTcc > 1:1113896/1‑100 (MQ=255) tGGCGAAAGATAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTcc > 1:1692476/1‑100 (MQ=255) ggCGAAAGATAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCca < 1:77482/100‑1 (MQ=255) gCGAAAGATAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCcac < 1:1637119/100‑1 (MQ=255) cGAAAGATAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCcaca > 2:1232225/1‑100 (MQ=255) aaaGATAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCcacaca < 1:462591/100‑1 (MQ=255) aaaGATAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCcacac < 2:522503/99‑1 (MQ=255) aaGATAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACaa > 2:1075915/1‑100 (MQ=255) aGATAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAat > 1:1446723/1‑100 (MQ=255) gATAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAata < 2:1950714/100‑1 (MQ=255) aTAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCCCCAGTAGCGGACACAAACTATTCCACACAata > 1:43662/1‑99 (MQ=255) aTAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAatat > 1:226961/1‑100 (MQ=255) aagaagTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATcc > 2:1764512/1‑100 (MQ=255) agaagTTACATCACCTTAGGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTCCCGGCGACAAACTATTCCACACAATATCCa > 1:1076611/1‑100 (MQ=255) agaagTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCa < 1:314313/100‑1 (MQ=255) agaagTTACATCACCTTACGTCTAAACATCGCATACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCa > 2:686856/1‑100 (MQ=255) gaagTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAg < 1:125653/100‑1 (MQ=255) tACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCg < 1:1119254/100‑1 (MQ=255) cATCACCTTACGTCTAAACATCGCGTACGCGGCAGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATGCAGACTCGCa > 2:1475766/1‑100 (MQ=255) cATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCa < 1:1427680/100‑1 (MQ=255) tCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATc < 1:934016/100‑1 (MQ=255) cACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATcc < 2:192806/100‑1 (MQ=255) tACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCaa < 1:2123562/100‑1 (MQ=255) aaaCATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATc > 2:387074/1‑100 (MQ=255) tCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCtt < 2:922631/100‑1 (MQ=255) cgcgTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTg < 2:1955360/100‑1 (MQ=255) cgcgTACGCCGCTGACCCTGTCGTGGACGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATc < 2:930384/94‑1 (MQ=255) gcgTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTgg > 1:1074364/1‑100 (MQ=255) cgTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGt < 1:1853258/100‑1 (MQ=255) gTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTa < 2:408387/100‑1 (MQ=255) cgccgcTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATg > 2:2179470/1‑100 (MQ=255) gccgcTGACCCTGTCGTGGCCGTTATCACCAGTAGcggccacaacagggtcagcggcgtacgcgatgtttagacgtaaggtgatgtaacttcttatcttt < 2:986166‑M2/100‑66 (MQ=255) gcTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCg < 2:1401280/100‑1 (MQ=255) aCCCTGTTGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTaaa < 2:935881/100‑1 (MQ=255) cccTGTCGTGGCCGTTATCACCAGTAGcggccacgacagggtcagcggcgtacgcgatgtttagacgtaaggtgatgtaacgtcttatctttcgccagca < 2:697715‑M2/100‑74 (MQ=255) cTGTCGTGGCCGTTATCACCAGTAGcggccacgacagggtcagcggcgtacgcgatgtttagacgtaaggtgatgtaacttcttatctttcgccagcaaa < 1:1063979‑M2/100‑76 (MQ=255) cTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGt < 1:1232230/99‑1 (MQ=255) cTGTCGTGGCCGTTATAACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCACCCTTCAAATAAATCTGCTTGGTAATGTCCGTAACGTg > 2:1510734/1‑100 (MQ=255) tGTCGTGGCCGTTATCACCAGTAGcggccacgacagggtcagcggcgtacgcgatgtttagacgtaaggtgatgtaacttcttatctttcgccagcaaag < 1:1537380‑M2/100‑77 (MQ=255) gTCGTGGCCGTTATCACCAGTAGcggccacgacagggtcagcggcgtacgcgatgtttagacgtaaggtgatgtaacttcttatctttcgccagcaaaga < 1:1115550‑M2/100‑78 (MQ=255) tCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCg < 1:1104212/100‑1 (MQ=255) cGTGGCCGTTATCACCAGTAGcggccacgacagggtcagcggcgtacgcgatgtttagacgtaaggtgatgtaacttcttatctttcgccagcaaagaca < 1:1713764‑M2/100‑80 (MQ=255) cGTGGCCGTTATCACCAGTAGcggccacgacagggtcagcggcgtacgcgatgtttagacgtaaggtgatgtaacttcttatctttcgccagcaaagaca < 1:507020‑M2/100‑80 (MQ=255) gTGGCCGTTATCACCAGTAGcggccacgacagggtcagcggcgtacgcgatgtttagacgtaaggtgatgtaacttcttatctttcgccagcaaagacac < 1:1507565‑M2/100‑81 (MQ=255) gTGGCCGTTATCACCAGTAGcggccacgacagggtcagcggcgtacgcgatgtttagacgtaaggtgatgtaacttcttatctttcgccagcaaagacac < 2:1448239‑M2/100‑81 (MQ=255) gTGGCCGTTATCACCAGTAGcggccacgacagggtcagcggcgtacgcgatgtttagacgtaaggtgatgtaacttcttatctttcgccagcaaagacac < 2:2203825‑M2/100‑81 (MQ=255) tGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAAt < 1:387073/100‑1 (MQ=255) tGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAAt < 1:183033/100‑1 (MQ=255) ggCCGTTATCACCAGTAGcggccacgacagggtcagcggcgtacgcgatgtttagacgtaaggtgatgtaacttcttatctttcgccagcaaagacacta < 1:2053322‑M2/100‑83 (MQ=255) ggCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATa < 1:435206/100‑1 (MQ=255) gCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAg < 1:467424/100‑1 (MQ=255) gCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATACTTCAAATGAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATa > 2:733158/1‑99 (MQ=255) gCCGTTATCACCAGTAGCGGCCACAAACTATGCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAg > 1:1508062/1‑100 (MQ=255) gCCATTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAGATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAg < 2:360315/100‑1 (MQ=255) ccGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAgg < 1:1615972/100‑1 (MQ=255) cGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAggg < 1:239848/100‑1 (MQ=255) ttATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAggg < 1:41283/98‑1 (MQ=255) ttATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGtt < 1:116884/100‑1 (MQ=255) ttATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGtt < 1:2179485/100‑1 (MQ=255) tATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTa < 1:633291/100‑1 (MQ=255) tCACCAGTAGcggccacgacagggtcagcggcgtacgcgatgtttagacgtaaggtgatgtaacttcttatctttcgccagcaaagacactaccgccggg > 2:1063977‑M2/1‑10 (MQ=255) tCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAAt > 2:1411999/1‑100 (MQ=255) ncACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAAt > 1:2114217/2‑100 (MQ=255) cACCAGTAGCGGCCACAAACTATTCAACACAAAATACAGACACGCATCCTTCAAATAAATCTGCTAGGAAATGTCCGTAAAGTGGCGAATAGGGGCAATc > 2:69942/1‑100 (MQ=255) aCCAGTAGCGGCTACAAACTATTACAAACAATATCCAGACTAGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAAGGTTAATcc > 2:195482/1‑100 (MQ=255) aCCAGTAGCGGCCACAAACTATTCCACACAATATCCCGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATcc < 2:1240641/100‑1 (MQ=255) ccAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCa < 1:1659429/100‑1 (MQ=255) aGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACg < 2:332310/100‑1 (MQ=255) gTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCCAATAAATCTGCTTGCTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGt > 2:92843/1‑100 (MQ=255) tAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTc < 1:1417793/100‑1 (MQ=255) | GCGGTAGTGTCTTTGCTGGCGAAAGATAAGAAGTTACATCACCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTC > NC_000913/824969‑825164 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |