New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1167402 =	NA (NA)	4 (0.050)	4/162	NT	NA	noncoding (1/30 nt)	REP103 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP103 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	1167432 =	NA (NA)					intergenic (+43/‑167)	ndh/ycfJ	respiratory NADH dehydrogenase 2/cupric reductase/uncharacterized protein

TGGAAATACTTAAGGATTCGGAGGAGTCTGAAAGGATGCCTGATACAACGCGGCTGCCGATCGCGCTGTTCCTCAAGGGCGGATGAGGCGTTTATGCCACATCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1167508‑1167402 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catccgccCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTTTCATCT  >  NC_000913/1167432‑1167530                                                                                                                                                                                                                TGGAAATACTTAAGGATTCGGAGGAGTCTGAAAGGATGCCTGATACAACGCGGCTGCCGATCGCGCTGTTCCTCAAGGGCGGATGAGGCGTTTATGCCAC                                                                                                            <  2:1407663/100‑1   GAAATACTTAAGGATTCGGAGGAGTCTGAAAGGATGCCTGATACAACGCGGCTGCCGATCGCGCTGTTCCTCAAGGGCGGATGAGGCGTTTATGCCACAT                                                                                                          >  1:1492342/1‑100       TACTTAAGGATTCGGAGGAGTCTGAAAGGATGCCTGATACAACGCGGCTGCCGATCGCGCTGTTCCTCAAGGGCGGATGTGGCATAAACGCCTCATCCGC                                                                                                      <  2:201050/100‑1        ACTTAAGGATTCGGAGGAGTCTGAAAGGATGCCTGATACAACGCGGCTGCCGATCGCGCTGTTCCTTAAAGGCGGATGAGGCGTTTATGCCACATCCGCC                                                                                                     <  2:1474169/100‑1         cgTAAGGATTCGGCGGAGTCTGAAAGGATGCCTGATACAACGCGGCTGCCGATCGCGCTGTTCCTCAAGGGCGGATGAGGCGTTTATGCCACATCCGCC                                                                                                     >  1:1511716/3‑99                  TCGGAGGAGTCTGAAAGGATGCCTGATACAACGCGGCTGCCGATCGCGCTGTTCCTCAAGGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAAC                                                                                           <  1:1328919/100‑1                                                                             GGGCGGATGAGGCGTTTATGCCACATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAG                                >  2:1636065/1‑100                                                                               GCGGATGAGGCGTTTATGCCACATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTA                              >  1:2073081/1‑100                                                                                CGGATGAGGCGTTTATGCCACATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTAT                             >  1:1005068/1‑100                                                                                                     ATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTT        >  2:680714/1‑100                                                                                                       CCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGTATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTTTC      <  1:717831/100‑1                                                                                                       CCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTT         >  1:2106354/1‑97                                                                                                       CCGCCCTTGAGGAACAGCACAATCGGCAACCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCATTAAGTATTTCCAGCCATTCCCGCGCTTTTC      >  2:544999/1‑100                                                                                                        CGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTTCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTTTC      >  2:1569675/1‑99                                                                                                        CGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTTTCA     >  2:751743/1‑100                                                                                                         GCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTTTCAT    <  2:1045680/100‑1                                                                                                         GCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTTTCAT    <  1:207286/100‑1                                                                                                           CCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTTTCATCT  >  2:1724592/1‑100                                                                                                                                                                                                                TGGAAATACTTAAGGATTCGGAGGAGTCTGAAAGGATGCCTGATACAACGCGGCTGCCGATCGCGCTGTTCCTCAAGGGCGGATGAGGCGTTTATGCCACATCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1167508‑1167402 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catccgccCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTTTCATCT  >  NC_000913/1167432‑1167530

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.