New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1167402 =	NA (NA)	4 (0.050)	4/162	NT	NA	noncoding (1/30 nt)	REP103 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP103 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	1167432 =	NA (NA)					intergenic (+43/‑167)	ndh/ycfJ	respiratory NADH dehydrogenase 2/cupric reductase/uncharacterized protein

ATGATGCTGGTGGGGAGTATTAACCGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTTTCATCTT  >  NC_000913/1167333‑1167531                                                                                                    |                                                                                                    cttaaggattcggaggagtctgaaaggatgcctgatacaacgcggctgccgatcgcgctgttcctcaagGGCGGATGTGGCATAAACGCCTCATCCGccc                                                                                                     >  2:1636065‑M1/70‑100 (MQ=255)   gatgCTGGTGGGGAGTATTAACCGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCtt                                                                                                   >  1:1098914/1‑100 (MQ=255)   gatgCTGGTGGGGAGTATTAACCGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCtt                                                                                                   >  1:1310971/1‑100 (MQ=255)   gatgCTGGTGGGGAGTATTAACCGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCtt                                                                                                   <  2:992656/100‑1 (MQ=255)    atgCTGGTGGGGAGTATTAACCGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTg                                                                                                  <  1:1397863/100‑1 (MQ=255)       cTGGTGGGGAGTATTAACCGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAgg                                                                                               <  1:282697/100‑1 (MQ=255)         ggtggGGAGTATTAACCGCGTTATCCGACCGCGTTTGAAGTTGCATTAATCGACGTATACTGGCGAAGGTGGCATAAACGCCTCATCCGCCCTTGAgg                                                                                               <  2:1262989/98‑1 (MQ=255)          tcggaggagtctgaaaggatgcctgatacaacgcggctgccgatcgcgctgttcctcaagggcggatgtggcataaacgcctcatccgccCTTGAGGAAc                                                                                            <  1:1328919‑M2/10‑1 (MQ=255)              ggAGTATTAACCGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGT‑GCATAAACGCCTCATCCGCCCTTGAGGAACAgcgc                                                                                       >  2:1657609/1‑100 (MQ=255)               gAGTATTAACCGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAgcgc                                                                                       <  2:735822/100‑1 (MQ=255)                   aTTAACCGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATc                                                                                   >  1:577293/1‑100 (MQ=255)                    ttAACCGCGTTATCCGTCCGCGTTTGAAGTTGTATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCg                                                                                  <  1:979252/100‑1 (MQ=255)                    ttAACCGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCg                                                                                  <  2:1740165/100‑1 (MQ=255)                     tAACCGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCgg                                                                                 >  1:970487/1‑100 (MQ=255)                     tAACCGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCg                                                                                  <  2:1078659/99‑1 (MQ=255)                     tAACCGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGAACgg                                                                                 >  2:766889/1‑100 (MQ=255)                      aaCCGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGc                                                                                >  2:182690/1‑100 (MQ=255)                       aCCGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCa                                                                               >  2:873530/1‑100 (MQ=255)                       aCCGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCa                                                                               <  2:1268611/100‑1 (MQ=255)                        ccGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAg                                                                              >  2:1958196/1‑100 (MQ=255)                        ccGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAg                                                                              <  2:940166/100‑1 (MQ=255)                         cgcgTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGc                                                                             >  1:40309/1‑100 (MQ=255)                             ttATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCcgcg                                                                         >  1:1862484/1‑100 (MQ=255)                              tATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGt                                                                        >  1:2015436/1‑100 (MQ=255)                               aTCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGtt                                                                       <  2:851334/100‑1 (MQ=255)                                tccgtccgCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTg                                                                      <  2:221046/100‑1 (MQ=255)                                tccgtccgCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTg                                                                      <  1:1717882/100‑1 (MQ=255)                                  cgtccgCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTa                                                                    >  2:2076717/1‑100 (MQ=255)                                  cgtccgCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTa                                                                    <  1:1149566/100‑1 (MQ=255)                                      cgcgTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAg                                                                >  1:353392/1‑100 (MQ=255)                                      cgcgTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAg                                                                <  2:369514/100‑1 (MQ=255)                                       gcgTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGAAGCCGCGTTGTATCAgg                                                               <  2:760483/100‑1 (MQ=255)                                         gTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCa                                                             >  2:756329/1‑100 (MQ=255)                                         gTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCa                                                             >  1:664764/1‑100 (MQ=255)                                         gTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCa                                                             >  2:754502/1‑100 (MQ=255)                                         gTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCa                                                             >  1:317327/1‑100 (MQ=255)                                           ttGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAGCGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATc                                                           <  2:1559368/100‑1 (MQ=255)                                            tGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATcc                                                          >  1:1585623/1‑100 (MQ=255)                                            tGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATcc                                                          >  2:829015/1‑100 (MQ=255)                                                gTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTc                                                      <  2:1760108/100‑1 (MQ=255)                                                gTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTc                                                      >  2:1433920/1‑100 (MQ=255)                                                 ttGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCa                                                     <  2:719419/100‑1 (MQ=255)                                                 ttGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCa                                                     <  1:1353816/100‑1 (MQ=255)                                                  tGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAg                                                    <  1:2142943/100‑1 (MQ=255)                                                    cATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATTGGCAGCCGCGTTGTATCAGGCATCCTTTCAGAc                                                  >  1:661446/1‑100 (MQ=255)                                                    cATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGAc                                                  >  1:886867/1‑100 (MQ=255)                                                    cATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGAc                                                  >  2:15726/1‑100 (MQ=255)                                                     aTTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGAc                                                  <  1:1334784/99‑1 (MQ=255)                                                      ttAATCGGCGTTCGCTTGCGGATGTGGCATAAACGCCTCATCCGGCATTGAGGAACAGCGCGATCGGTAGTTGTGTTGTATTAGGCATCCTTTCAGAc                                                  <  2:296962/98‑1 (MQ=255)                                                        aaTCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGActcct                                              >  1:1168245/1‑100 (MQ=255)                                                          tCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACtcctcc                                            <  2:367178/100‑1 (MQ=255)                                                            gttcctcaagGGCGGATGAGGCGTTTATGCCACATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGa                                          <  1:1328919‑M1/90‑1 (MQ=255)                                                            gACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGa                                          >  1:13525/1‑100 (MQ=255)                                                                tACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATcc                                      <  1:1063093/100‑1 (MQ=255)                                                                tACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATcc                                      >  1:1652489/1‑100 (MQ=255)                                                                 acacTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCt                                     <  1:2166535/100‑1 (MQ=255)                                                                   acTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTa                                   <  1:1883927/100‑1 (MQ=255)                                                                   acTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTa                                   <  2:1406820/100‑1 (MQ=255)                                                                   acTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTa                                   <  2:1736187/100‑1 (MQ=255)                                                                    cTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTaa                                  >  1:1497574/1‑100 (MQ=255)                                                                    cTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTaa                                  >  2:1597617/1‑100 (MQ=255)                                                                    cTGGCGGATGTGGCATAAACGACTCATCCGCACTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAAGCATCCTTTCAGAACCCTTCGAATGCttca                                  >  2:2156350/1‑98 (MQ=255)                                                                     tGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAg                                 <  1:1755485/100‑1 (MQ=255)                                                                     gggcggatgaggcgtttatgccacatccgccCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAg                                 >  2:1636065‑M2/32‑100 (MQ=255)                                                                      GGCGGATGTGGCATAAACGCCTCATCCGCCTTTAAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGt                                <  2:1474169‑M1/100‑1 (MQ=255)                                                                      GGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCGCCGAATCCttacg                                 >  1:1511716‑M1/1‑97 (MQ=255)                                                                       gcggatgaggcgtttatgccacatccgccCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTa                               >  1:2073081‑M2/30‑100 (MQ=255)                                                                       GCGGATGAGGCGTTTATGCCACATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTa                               <  2:201050‑M1/100‑1 (MQ=255)                                                                        cggatgaggcgtttatgccacatccgccCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTAt                              >  1:1005068‑M2/29‑100 (MQ=255)                                                                           ATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTc                           >  1:1492342‑M1/1‑100 (MQ=255)                                                                             GTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCa                         <  2:1407663‑M1/100‑1 (MQ=255)                                                                              tgGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAg                        >  1:150462/1‑100 (MQ=255)                                                                               ggCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGc                       <  1:453140/100‑1 (MQ=255)                                                                               ggCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGc                       >  1:1944990/1‑100 (MQ=255)                                                                               ggCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGc                       <  1:1704709/100‑1 (MQ=255)                                                                               ggCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGc                       >  1:1603246/1‑100 (MQ=255)                                                                               ggCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGc                       >  1:1394117/1‑100 (MQ=255)                                                                                gCATAAACGCCTCATCTGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGcc                      >  1:132454/1‑100 (MQ=255)                                                                                gCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGcc                      >  1:1016278/1‑100 (MQ=255)                                                                                 cATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCa                     <  1:901507/100‑1 (MQ=255)                                                                                 cATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCAAGGCa                     >  2:1897082/1‑100 (MQ=255)                                                                                   tAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCAtt                   >  2:693303/1‑100 (MQ=255)                                                                                   tAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCAtt                   >  2:157405/1‑100 (MQ=255)                                                                                    aaaCGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTc                  >  1:831986/1‑100 (MQ=255)                                                                                       cGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCcg               >  2:2206052/1‑100 (MQ=255)                                                                                        gCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCcgc              >  2:1243617/1‑100 (MQ=255)                                                                                         ccTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCcgcg             >  2:1802995/1‑100 (MQ=255)                                                                                           tCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCt           <  1:189980/100‑1 (MQ=255)                                                                                             atccgccCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCttt         >  2:680714‑M2/8‑100 (MQ=255)                                                                                               ccgccCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGTATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTTTc       <  1:717831‑M2/95‑1 (MQ=255)                                                                                               ccgccCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCtt          >  1:2106354‑M2/6‑97 (MQ=255)                                                                                               ccgccCTTGAGGAACAGCACAATCGGCAACCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCATTAAGTATTTCCAGCCATTCCCGCGCTTTTc       >  2:544999‑M2/6‑100 (MQ=255)                                                                                                cgccCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTTCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTTTc       >  2:1569675‑M2/5‑99 (MQ=255)                                                                                                cgccCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTTTCa      >  2:751743‑M2/5‑100 (MQ=255)                                                                                                 gccCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTTTCAt     <  2:1045680‑M2/97‑1 (MQ=255)                                                                                                 gccCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTTTCAt     <  1:207286‑M2/97‑1 (MQ=255)                                                                                                   cCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTTTCATCt   >  2:1724592‑M2/2‑100 (MQ=255)                                                                                                    cTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTTTCAtctt  >  2:18323/1‑100 (MQ=255)                                                                                                    |                                                                                                    ATGATGCTGGTGGGGAGTATTAACCGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTTTCATCTT  >  NC_000913/1167333‑1167531

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.