New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1852547	NA (NA)	7 (0.100)	6/156	NT	NA	intergenic (+19/+74)	pncA/ydjE	nicotinamidase/pyrazinamidase/putative MFS sugar transporter, membrane protein
	?	NC_000913	= 1852558	NA (NA)					intergenic (+30/+63)	pncA/ydjE	nicotinamidase/pyrazinamidase/putative MFS sugar transporter, membrane protein

CCAGGACAGTGCGCACGCGTTTATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1852441‑1852547 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcctacaatGCCAGTACAGAATTGTAGGCCAGCGTAAAATTACCCCTGTGTCTCTTCCCAGTCTGCCAGCGTATATAGCGTTGCCCCAGCTGCTGACATCTCCATAA  <  NC_000913/1852558‑1852461                                                                                                                                                                                                               CCAGGACAGTGCGCACGCGTTTATGGAGATGTAAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGCTAATTTTACGCTGGC                                                                                                           >  2:764174/1‑100  CAGGACAGTGCGCACGCGTTTATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCC                                                                                                          >  1:2205703/1‑100     GACAGTGCGCACGCGTTTATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTAC                                                                                                       <  1:2010017/100‑1        AGTGCGCACGCGTTTATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAAT                                                                                                    <  1:379511/100‑1                           AGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATGCCAGTACAGAATTGTAGG                                                                                 <  1:2153783/100‑1                             ATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATGCCAGTACAGAATTGTAGGCC                                                                               <  1:786957/100‑1                             ATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATGCCAGTACAGAATTGTAGGC                                                                                <  1:435821/99‑1                                TCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATGCCAGTACAGAATTGTAGGCCAGC                                                                            <  2:2015429/100‑1                                 CAGCAGCTGGGGCAACGCTATATACGGTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGACTACAATGCCAGTACAGAATTGTAGGCCAGCG                                                                           <  2:1713194/100‑1                                 CAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATGCCAGTACAGAATTGTAGGCCAGCG                                                                           <  1:206975/100‑1                                   GCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATGCCAGTACAGAATTGTAGGCCAGCGTA                                                                         <  1:1564322/100‑1                                                                                                 TGGCCTACAATGCCAGTACAGAATTGTAGGCCAGCGTAAAATTACCCCTGTGTCTCTTCCCAGTCTGCCAGCGTATATAGCGTTGCCCCAGCTGCTGACA           >  1:2064626/1‑100                                                                                                  GGCCTACAATGCCAGTACAGAATTGTAGGCCAGCGTAAAATTACCCCTGTGTCTCTTCCCAGTCTGCCAGCGTATATAGCGTTGCCCCAGCTGCTGACAT          >  1:1706445/1‑100                                                                                                   GCCTACAATGCCAGTACAGAATTGTAGGCCAGCGTAAAATTACCCCTGTGTCTCTTCCCAGTCTGCCAGCGTATATAGCGTTGCCCCAGCTGCTGACATC         <  1:952281/100‑1                                                                                                    CCTACAATGCCAGTACAGAATTGTAGGCCAGCGTAAAATTACCCCTGTGTCTCTTCCCAGTCTGCCAGCGTATATAGCGTTGCCCCACCTGCTGACATC         >  2:1786424/1‑99                                                                                                     CTACAATGCCAGTACAGAATTGTAGGCCAGCGTAAAATTACCCCTGTGTCTCTTCCCAGTCTGCCAGCGTATATAGCGTTGCCCCAGCTGCTGACATCTC       >  1:2190930/1‑100                                                                                                     CTACAATGCCAGTACAGAATTGTAGGCCAGCGTAAAATTACCCCTGTGTCTCTTCCCAGTCTGCCAGCGTATATAGCGTTGCCCCAGCTGCTGACATCTC       <  1:1781204/100‑1                                                                                                      TACAATGCCAGTACAGAATTGTAGGCCAGCGTAAAATTACCCCTGTGTCTCTTCCCAGTCTGCCAGCGTATATAGCGTTGTCCCAGCTGCTGACATCTCC      <  2:857654/100‑1                                                                                                      TACAATGCCAGTACAGAATTGTAGGCCAGCGTAAAATTACCCCTGTGTCTCTTCCCAGTCTGCCAGCGTATATAGCGTTGCCCCAGCTGCTGACATCTCC      <  2:785080/100‑1                                                                                                          ATGCCAGTACAGAATTGTAGGCCAGCGTAAAATTACCCCTGTGTCTCTTCCCAGTCTGCCAGCGTATATAGCGTTGCCCCAGCTGCTGACATCTCCATAA  >  1:1864835/1‑100                                                                                                          ATGCCAGTACAGAATTGTAGGCCAGCGTAAAATTACCCCTGTGTCTCTTCCCAGTCTGCCAGCGTATATAGCGTTGCCCCAGCTGCTGACATCTCCATA   <  2:2034563/99‑1                                                                                                                                                                                                               CCAGGACAGTGCGCACGCGTTTATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1852441‑1852547 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcctacaatGCCAGTACAGAATTGTAGGCCAGCGTAAAATTACCCCTGTGTCTCTTCCCAGTCTGCCAGCGTATATAGCGTTGCCCCAGCTGCTGACATCTCCATAA  <  NC_000913/1852558‑1852461

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.