New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1852547NA (NA)7 (0.100) 6/156 NT NA intergenic (+19/+74) pncA/ydjE nicotinamidase/pyrazinamidase/putative MFS sugar transporter, membrane protein
?NC_000913 = 1852558 NA (NA)intergenic (+30/+63) pncA/ydjE nicotinamidase/pyrazinamidase/putative MFS sugar transporter, membrane protein

TTATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAATCTCTTCCAACGACACCTTC  >  NC_000913/1852461‑1852657
                                                                                                 |                                                                                                   
ttATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCat                                                                                                   >  1:1864835‑M2/1‑98 (MQ=255)
 tATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCat                                                                                                   <  2:2034563‑M2/99‑3 (MQ=255)
    ggAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCattgta                                                                                               <  2:785080‑M2/100‑7 (MQ=255)
    ggAGATGTCAGCAGCTGGGACAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCattgta                                                                                               <  2:857654‑M2/100‑7 (MQ=255)
     gagaTGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCattgtag                                                                                              >  1:2190930‑M2/1‑93 (MQ=255)
     gagaTGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCattgtag                                                                                              <  1:1781204‑M2/100‑8 (MQ=255)
      gatttctgaggtgaattaaatctttcgttgatggcatcaattgccagatgtgccactgacgtgttttatttggcctacAATTCTGTACTGGCATTGTAgg                                                                                             >  1:332827‑M1/79‑100 (MQ=255)
       gaTGTCAGCAGGTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCattgtagg                                                                                             >  2:1786424‑M2/1‑91 (MQ=255)
       gaTGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCattgtaggc                                                                                            <  1:952281‑M2/100‑10 (MQ=255)
        tttctgaggtgaattaaatctttcgttgatggcatcaattgccagatgtgccactgacgtgttttatttggcctacAATTCTGTACTGGCATTGTAGGcc                                                                                           >  1:977232‑M1/77‑100 (MQ=255)
        aTGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCattgtaggcc                                                                                           >  1:1706445‑M2/1‑90 (MQ=255)
         tGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCattgtaggcca                                                                                          >  1:2064626‑M2/1‑89 (MQ=255)
          gTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCaa                                                                                         >  1:150963/1‑100 (MQ=255)
            tgaggtgaattaaatctttcgttgatggcatcaattgccagatgtgccactgacgtgttttatttggcctacAATTCTGTACTGGCATTGTAGGCCAAAt                                                                                       >  1:400098‑M1/73‑100 (MQ=255)
            cagcagCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTATGTACTGGCATTGTAGGCCAAAt                                                                                       >  2:2189767/1‑100 (MQ=255)
                agcTGGGGCAACGCTATATACGCTGGCAGACTGGTAAGAGACATAGGGGTAATTTTACGCTGTCCTACAATTCTTTATTGTTATTGTAGGCAAAATa                                                                                      <  2:1072008/97‑1 (MQ=255)
                 gcTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTTGCATTGTAGGCCAAATAAAac                                                                                  <  2:2202390/100‑1 (MQ=255)
                 gcTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAac                                                                                  <  2:2244957/100‑1 (MQ=255)
                     gggCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCGAATAAAACACGt                                                                              >  1:888304/1‑100 (MQ=255)
                     gggCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGt                                                                              >  1:1766041/1‑100 (MQ=255)
                      ggCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTc                                                                             >  2:1544295/1‑100 (MQ=255)
                       gCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCa                                                                            >  1:1966205/1‑100 (MQ=255)
                        cAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAg                                                                           >  1:1863940/1‑100 (MQ=255)
                            gCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGc                                                                       <  2:952279/100‑1 (MQ=255)
                            gCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGc                                                                       <  2:1173395/100‑1 (MQ=255)
                            gCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGc                                                                       >  2:1410795/1‑100 (MQ=255)
                            gCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGc                                                                       <  2:321352/100‑1 (MQ=255)
                            gCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGc                                                                       <  1:1711987/100‑1 (MQ=255)
                            gCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCGACAATTATGTACTGGCATTGTAGGCCAAATAAAACACGGCAGTgg                                                                        >  2:2138939/1‑99 (MQ=255)
                                tataCGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACAt                                                                   >  2:1542284/1‑100 (MQ=255)
                                    cGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTgg                                                               <  1:1410805/100‑1 (MQ=255)
                                    cGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTgg                                                               >  1:1870130/1‑100 (MQ=255)
                                        ggCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAAt                                                           >  1:857349/1‑100 (MQ=255)
                                        ggCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGCAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAAt                                                           <  2:1196122/100‑1 (MQ=255)
                                              cTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATg                                                      >  2:366468/1‑99 (MQ=255)
                                              cTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATg                                                      <  1:922575/99‑1 (MQ=255)
                                                gggAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCa                                                   >  1:792780/1‑100 (MQ=255)
                                                gggAAGAGACACAGGGGCAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCa                                                   <  2:1929028/100‑1 (MQ=255)
                                                 ggAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCAt                                                  >  1:985334/1‑100 (MQ=255)
                                                  gAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCAt                                                  >  1:1982066/1‑99 (MQ=255)
                                                  gAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATc                                                 <  2:716906/100‑1 (MQ=255)
                                                  gAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATc                                                 <  2:1396438/100‑1 (MQ=255)
                                                    agagACACAGGGGTAATTTTAAGCTGGCTTACAATTCTGTACAGGCCTTGTAGGCCAAATGAAAGACGTCAGTGGAACATCTGGCAATTGATGCcaacaa                                               >  2:141927/1‑100 (MQ=255)
                                                     gagaCACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAAc                                              <  2:1767972/100‑1 (MQ=255)
                                                     atgtgccactgacgtgttttatttggcctacAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAAc                                              >  1:1556061‑M1/32‑100 (MQ=255)
                                                      ttccgatctggTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACg                                             <  2:1034017/91‑1 (MQ=255)
                                                      atacacAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACg                                             <  1:423644/98‑1 (MQ=255)
                                                      agaCACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACg                                             <  1:400047/100‑1 (MQ=255)
                                                         cacaGGGGTAATTTTTCGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGaa                                           <  2:1781192/99‑1 (MQ=255)
                                                         cacaGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGCCAGTGGCACATCTGGCAATTGATGCCATCAACGaaa                                          <  1:1584001/100‑1 (MQ=255)
                                                          acaGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAg                                         <  1:1819311/100‑1 (MQ=255)
                                                           caGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGa                                        >  2:1041088/1‑100 (MQ=255)
                                                           caGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGa                                        >  1:2036053/1‑100 (MQ=255)
                                                           caGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGa                                        >  1:480207/1‑100 (MQ=255)
                                                            aGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGAt                                       <  1:1630270/100‑1 (MQ=255)
                                                            aGGGGTAATTTTACGCTGGCCTAAAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGAt                                       <  2:1894137/100‑1 (MQ=255)
                                                              gggTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTATGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGAttt                                     <  2:1747509/100‑1 (MQ=255)
                                                               ggTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGagatcggaa                                    >  1:1034019/1‑92 (MQ=255)
                                                               ggTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTa                                    <  2:1308910/100‑1 (MQ=255)
                                                                 tAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACTTAAGTGGCACATCTCGCAATTGATTCTATCAACGAAAGATTTAAt                                  <  2:2104395/100‑1 (MQ=255)
                                                                 tAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAAt                                  <  1:1146704/100‑1 (MQ=255)
                                                                   aTTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTc                                >  2:1423143/1‑100 (MQ=255)
                                                                   aTTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTc                                >  2:1042661/1‑100 (MQ=255)
                                                                   aTTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTc                                <  1:2166251/100‑1 (MQ=255)
                                                                      ttACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCAACAACGAAAGATTTAATTCa                               >  2:2017546/1‑98 (MQ=255)
                                                                       tACGCTGGCCTACAATTCTGTACTGGCattgtaggccagcgtaaaattacccctgtgtctcttcccagtctgccagcgtatatagcgttgccccagctgc                            <  1:1564322‑M2/100‑74 (MQ=255)
                                                                         cGCTGGCCTACAATTCTGTACTGGCattgtagtccagcgtaaaattacccctgtgtctcttcccagtctgccaccgtatatagcgttgccccagctgctg                          <  2:1713194‑M2/100‑76 (MQ=255)
                                                                         cGCTGGCCTACAATTCTGTACTGGCattgtaggccagcgtaaaattacccctgtgtctcttcccagtctgccagcgtatatagcgttgccccagctgctg                          <  1:206975‑M2/100‑76 (MQ=255)
                                                                         cGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCa                          >  2:227243/1‑100 (MQ=255)
                                                                          gCTGGCCTACAATTCTGTACTGGCattgtaggccagcgtaaaattacccctgtgtctcttcccagtctgccagcgtatatagcgttgccccagctgctga                         <  2:2015429‑M2/100‑77 (MQ=255)
                                                                           cTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGa                        >  2:1328408/1‑100 (MQ=255)
                                                                             ggcctacAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGaaa                      >  2:2225751‑M1/8‑100 (MQ=255)
                                                                             ggcctacAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGaaa                      <  2:1926705‑M1/93‑1 (MQ=255)
                                                                             ggCCTACAATTCTGTACTGGCattgtaggccagcgtaaaattacccctgtgtctcttcccagtctgccagcgtatatagcgttgccccagctgctgacat                      <  1:786957‑M2/100‑80 (MQ=255)
                                                                              gcctacAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAAt                     <  2:157261‑M1/94‑1 (MQ=255)
                                                                              gcctacAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAAt                     <  2:1204849‑M1/94‑1 (MQ=255)
                                                                              gCCTACAATTCTGTACTGGCattgtaggccagcgtaaaattacccctgtgtctcttcccagtctgccagcgtatatagcgttgccccagctgctgacat                      <  1:435821‑M2/99‑80 (MQ=255)
                                                                               cctacAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAAtc                    <  1:105817‑M1/95‑1 (MQ=255)
                                                                               ccTACAATTCTGTACTGGCattgtaggccagcgtaaaattacccctgtgtctcttcccagtctgccagcgtatatagcgttgccccagctgctgacatct                    <  1:2153783‑M2/100‑82 (MQ=255)
                                                                                ctacAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAAtct                   >  2:2106447‑M1/5‑100 (MQ=255)
                                                                                ctacAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAAtct                   <  2:861691‑M1/96‑1 (MQ=255)
                                                                                ctacAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAAtct                   <  2:2244278‑M1/96‑1 (MQ=255)
                                                                                 tacAATTCTGTACTGGCATTGTAGGACAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAAtctc                  >  2:1469576‑M1/4‑100 (MQ=255)
                                                                                     ATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAATCTCTTcc              <  2:1825148‑M1/100‑1 (MQ=255)
                                                                                         tGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAATCTCTTCCAACg          <  2:303190/100‑1 (MQ=255)
                                                                                         tGTACTGGCATTGTAGGCCAAATAAAAAACGTCAGTGGAACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAATCTCTTCCAACg          <  1:748619/100‑1 (MQ=255)
                                                                                          ggaCTGGCATTGTAGGCTAAATAAAACACGTCAGTGGCACATCGGGCAATTTATGACATCAACGAAAGATTGAAAACACCTCAGAAATCTCTTCCAAc           >  2:1005017/3‑98 (MQ=255)
                                                                                          gTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCGCATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAATCTCTTCCAACGa         >  2:1501785/1‑100 (MQ=255)
                                                                                           tACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCTCCTCAGAAATCTCTTCCAACGac        <  2:576457/100‑1 (MQ=255)
                                                                                            aCTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAATCTCTTCCAACGaca       <  1:1559805/100‑1 (MQ=255)
                                                                                             cTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCACTTGATGCCATCAACAAAAGATTTAATTCACCTCAGAAATCTCTTCCAACGacac      >  2:1472597/1‑100 (MQ=255)
                                                                                                 cATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAATCTCTTCCAACGACACCTTc  >  2:1813699/1‑100 (MQ=255)
                                                                                                 cATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAATCTCTTCCAACGACACCTTc  >  2:2160297/1‑100 (MQ=255)
                                                                                                 |                                                                                                   
TTATGGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAATCTCTTCCAACGACACCTTC  >  NC_000913/1852461‑1852657

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.