New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1929923 =	NA (NA)	4 (0.050)	4/172	NT	NA	noncoding (1/84 nt)	REP135 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP135 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	1929955 =	NA (NA)					noncoding (33/84 nt)	REP135 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP135 (repetitive extragenic palindromic) element; contains 2 REP sequences

ATAATTCGATTGACTGTTGGCGGATGCGGCGCGAGTGCCTTGTCCGCCCCAGAACGCACCACAATCGTAGGCCTGAGAAGACGCAACAGCGTCGCATCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1930024‑1929923 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCG  >  NC_000913/1929955‑1930053                                                                                                                                                                                                           ATAATTCGATTGACTGTTGGCGGATGCGGCGCGAGTGCCTTGTCCGCCTCAGAACGCACCACAATCGTAGGCCTGAGAATACTCAACAGCGTCGCATCGG                                                                                                       <  2:448332/100‑1  TAATTCGATTGACTGTTGGCGGATGCGGCGCGAGTGCCTTGTCCGCCCCAGAACGCACCACAATCGTAGGCCTGAGAAGACGCAACAGCGTCGCATCGGG                                                                                                      <  1:42679/100‑1  TAATTCGATTGACTGTTGGCGGATGCGGCGCGAGTGCCTTGTCCGCCCCAGAACGCACCACAATCGTAGGCCTGAGAAGACGCAACAGCGTCGCATCGGG                                                                                                      >  2:2192183/1‑100   AATTCGATTGACTGTTGGCGGATGCGGCGCGAGTGCCTTGTCCGCCCCAGAACGCACCACAATCGTAGGCCTGAGAAGACGCAACAGCGTCGCATCGGGC                                                                                                     <  2:1625665/100‑1                                                                ATCGTAGGCCTGAGAAGACGCAACAGCGTCGCATCGGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAA                                        >  2:202417/1‑100                                                                    TAGGCCTGAGAAGACGCAACAGCGTCGCATCGGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGA                                    >  1:666959/1‑100                                                                     AGGCCTGAGAAGACGCAACAGCGTCGCATCGGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAA                                   >  1:1946449/1‑100                                                                       GCCTGAGAAGACGCAACAGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATT                                 >  1:2170169/1‑100                                                                                                    GGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTC    >  1:1675906/1‑100                                                                                                     GCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCC   >  2:1917073/1‑100                                                                                                     GCCTACGATTGTGGTGCGTTCCGAGGCGGACAAGGCACTCGCGCCGCACCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCC   >  2:1030512/1‑100                                                                                                      CCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCG  >  1:580189/1‑100                                                                                                      CCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCG  <  2:19865/100‑1                                                                                                                                                                                                           ATAATTCGATTGACTGTTGGCGGATGCGGCGCGAGTGCCTTGTCCGCCCCAGAACGCACCACAATCGTAGGCCTGAGAAGACGCAACAGCGTCGCATCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1930024‑1929923 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCG  >  NC_000913/1929955‑1930053

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.