| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1929923 = | NA (NA) | 4 (0.050) | 4/172 | NT | NA | noncoding (1/84 nt) | REP135 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP135 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 1929955 = | NA (NA) | noncoding (33/84 nt) | REP135 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP135 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
AAATTCGCGCCAGGTAAGGTATTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATT > NC_000913/1929824‑1930022 | cggaatatcagcggcgttaatggcttctgataattcgattgactgttggcggatgcggcgcgagtgccttgtccgccccagaacgcaccacaatcgtagg > 1:580189‑M1/100‑100 (MQ=255)cggaatatcagcggcgttaatggcttctgataattcgattgactgttggcggatgcggcgcgagtgccttgtccgccccagaacgcaccacaatcgtagg < 2:19865‑M1/1‑1 (MQ=255) ggaatatcagcggcgttaatggcttctgataattcgattgactgttggcgggtgcggcgcgagtgccttgtccgcctcggaacgcaccacaatcgtagGc > 2:1030512‑M1/99‑100 (MQ=255) ggaatatcagcggcgttaatggcttctgataattcgattgactgttggcggatgcggcgcgagtgccttgtccgccccagaacgcaccacaatcgtagGc > 2:1917073‑M1/99‑100 (MQ=255) gaatatcagcggcgttaatggcttctgataattcgattgactgttggcggatgcggcgcgagtgccttgtccgccccagaacgcaccacaatcgtagGcc > 1:1675906‑M1/98‑100 (MQ=255) aTTCGCGCCAGGTAAGGTATTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGcc > 1:2192198/1‑100 (MQ=255) aTTCGCGCCAGGTAAGGTATTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGcc < 1:1793370/100‑1 (MQ=255) ttCGCGCCAGGTAAGGTATTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGccc < 2:508712/100‑1 (MQ=255) cgcgCCAGGTAAGGTATTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGa < 2:2008743/100‑1 (MQ=255) cgcCAGGTAAGGTATTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATg < 1:1278275/100‑1 (MQ=255) gcCAGGTAAGGTATTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGc < 1:976090/100‑1 (MQ=255) cAGGTAAGGTATTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGa > 2:1380472/1‑100 (MQ=255) aggtaaggtaTTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGc < 2:1535364/97‑1 (MQ=255) aggtaaggtaTTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGAc < 1:1047426/100‑1 (MQ=255) ggtaaggtaTTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACg > 2:374982/1‑100 (MQ=255) gtaaggtaTTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACg > 1:683008/1‑99 (MQ=255) taaggtaTTTATTGTATATCAGGTGATAAGGGTAGTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCt < 1:415541/100‑1 (MQ=255) taaggtaTTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTTTGTGATGCTGATTGCCCGATGCGACGCt > 1:1790586/1‑100 (MQ=255) gtaTTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTg < 2:1569602/97‑1 (MQ=255) gtaTTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTg < 1:894818/100‑1 (MQ=255) gtaTTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTg < 1:390968/100‑1 (MQ=255) tACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGtct > 1:19865/1‑100 (MQ=255) caCTGTATATAAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGACGTTTTGAGTGGAACTGTTTGATGCTGATTGCCCGGTTCGACGCTGCTGCGtct > 2:27493/2‑100 (MQ=255) aCTGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGtctt > 1:2209402/1‑100 (MQ=255) tGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGtcttct < 1:985675/100‑1 (MQ=255) tGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGtcttct < 1:1136170/100‑1 (MQ=255) tGTATATAAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGACGTTTTGAGTGGAACTGTTTGATGCTGATTGCCCGGTTCGACGCTGCTGCGtcttct > 1:1236961/1‑100 (MQ=255) gTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGtattct > 2:917453/1‑99 (MQ=255) tatCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAgg < 1:150668/100‑1 (MQ=255) tatCAGGTGATAAGGGCATATTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAgg > 2:1281684/1‑100 (MQ=255) atCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGc > 2:890678/1‑100 (MQ=255) aattcgattgactgttggcggatgcggcgcgagtgccttgtccgccccagaacgcaccacaatcgtagGCCTGAGAAGACGCTGTTGCGTCTTCTCAGGc > 1:2170169‑M1/69‑100 (MQ=255) ttcgattgactgttggcggatgcggcgcgagtgccttgtccgccccagaacgcaccacaatcgtagGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCt > 1:1946449‑M1/67‑100 (MQ=255) tcgattgactgttggcggatgcggcgcgagtgccttgtccgccccagaacgcaccacaatcgtagGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTa > 1:666959‑M1/66‑100 (MQ=255) aGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTa > 1:756618/1‑100 (MQ=255) tGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGa > 1:1428611/1‑100 (MQ=255) tGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGa < 2:448831/100‑1 (MQ=255) ttgactgttggcggatgcggcgcgagtgccttgtccgccccagaacgcaccacaatcgtagGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGAt > 2:202417‑M1/62‑100 (MQ=255) gATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGAt < 1:866613/100‑1 (MQ=255) aTAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGAtt < 1:691608/100‑1 (MQ=255) tAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATtg < 1:2225472/100‑1 (MQ=255) aaGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATtgt < 1:547681/100‑1 (MQ=255) gggTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATtgtg > 1:957274/1‑99 (MQ=255) gggTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTgtgg > 2:1040585/1‑100 (MQ=255) ggTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTgtggt > 2:761312/1‑100 (MQ=255) ggTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTgtggt > 2:2159614/1‑100 (MQ=255) gTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTgtggtg < 2:2008322/100‑1 (MQ=255) ttAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTc < 1:1203802/100‑1 (MQ=255) ttAGGTGAAAGTAGTTTATCGTTATGACTGGCATTGTTTGAAGCTTATTGCTATATGCGACGCTGTTGCATCTTCTCTGTCCTACGATTctgg > 2:1879100/1‑93 (MQ=255) tGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGgg > 2:1670022‑M1/1‑98 (MQ=255) gAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGggc > 2:1124811‑M1/1‑97 (MQ=255) aaGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGggcgg < 1:457783‑M1/100‑6 (MQ=255) gtagtTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGAc < 1:890679/100‑1 (MQ=255) gtTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAg > 2:2114566/1‑100 (MQ=255) tttGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAgg > 1:1076435/1‑100 (MQ=255) tttGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAgg < 2:383410/100‑1 (MQ=255) tGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCa < 1:141390/100‑1 (MQ=255) cGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTc > 1:2156077/1‑100 (MQ=255) gTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTcg > 2:1619311/1‑100 (MQ=255) gTTTTAAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGCGGCGGACAAGGCACt > 1:1946566/1‑98 (MQ=255) ttGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCgcgc < 1:2036847/100‑1 (MQ=255) gAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGcgccg < 2:107892/100‑1 (MQ=255) aGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGcgccgc > 1:2054770/1‑100 (MQ=255) gTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCa > 1:1200270/1‑100 (MQ=255) cgCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGAGTGTGGTGCGTTCTGAGGCGGACAAGGCACTCGCGCCGCa > 2:259112/2‑98 (MQ=255) gCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCC < 1:343246‑M2/100‑1 (MQ=255) cATTGTTCGATCCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCATTCTGGGGCGGACAAGGCACTCGCGCCGCATCCG < 2:1173336‑M2/100‑1 (MQ=255) ttGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCC > 2:1933625‑M2/1‑100 (MQ=255) gTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGTGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCaa > 1:152919/1‑100 (MQ=255) tttGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGggcggatgcggcgcgagtgccttgtccgcccca < 1:991258‑M1/100‑34 (MQ=255) tttGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAAc < 1:394180/100‑1 (MQ=255) ttGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGggcggatgcggcgcgagtgccttgtccgccccag < 1:231828‑M1/100‑35 (MQ=255) tGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGAACTCGCGCCGCATCCGCCAACAg > 2:61723/1‑100 (MQ=255) gATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGggcggatgcggcgcgagtgccttgtccgccccaga < 1:2167539‑M1/99‑36 (MQ=255) aTGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTc < 2:1790574/100‑1 (MQ=255) tGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATc < 1:725505/100‑1 (MQ=255) tGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATc < 1:1029394/100‑1 (MQ=255) gATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCg > 2:709613/1‑100 (MQ=255) GCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAAtt < 2:1625665‑M1/100‑1 (MQ=255) | AAATTCGCGCCAGGTAAGGTATTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATT > NC_000913/1929824‑1930022 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |