New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3910443 =NA (NA)3 (0.040) 3/168 NT NA noncoding (1/35 nt) REP284 (repetitive extragenic palindromic) element; contains 1 REP sequences REP284 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 3910474 = NA (NA)noncoding (32/35 nt) REP284 (repetitive extragenic palindromic) element; contains 1 REP sequences REP284 (repetitive extragenic palindromic) element; contains 1 REP sequences

AAATTATGTCGCCCTTTTTACCCGGTGGGTTAAAAGCAGGCTTGGTTGCAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTTTATTAGTACAGCGGCTTACCGCTACTGTCTTTAATATTGGTCTTCCACGCAGCGCGAAC  >  NC_000913/3910344‑3910541
                                                                                                   |                                                                                                  
cgccagcctgccggatagtgtagttgaacaggttcgcgctgcgtggaagaccaatattaaagacagtagcggtaagccgctgtactaataaaactccagg                                                                                                    >  1:394974‑M1/100‑100 (MQ=255)
  ccagcctgccggatagtgtagttgaacaggttcgcgctgcgtgcaagaccaatattaaagacagtagcggtaagccgctgtactaataaaactccagGcc                                                                                                  >  2:1432106‑M1/98‑100 (MQ=255)
       gTCGCCCTTTTTACCCGGTGGGTTAAAAGCAGGCTTGGTTGCAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATg                                                                                             >  1:1087546/1‑100 (MQ=255)
         cGCCCTTTTTACCCGGTGGGTTAAAAGCAGGCTTGGTTGCAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATgc                                                                                            >  1:1096139/1‑99 (MQ=255)
         cGCCCTTTTTACCCGGTGGGTTAAAAGCAGGCTTGGTTACAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATgc                                                                                            <  2:1915267/99‑1 (MQ=255)
         cGCCCTTTTTACCCGGTGGATTAAAAGCAGGCTTGGTTTCAGCCATAAGTTACTCTTCAGTTAAACTCGTTTACAAAGTCATTTTGTAATGCCTGATgcg                                                                                           >  2:1113688/1‑100 (MQ=255)
            ccTTTTTACCCGGTGGGTTAAAAGCAGGCTTGGTTGCAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATgcggcg                                                                                        <  1:1623805/100‑1 (MQ=255)
                tttACCCGGTGGGTTAAAAGCAGGCTTGGTTGCAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTaaa                                                                                    <  2:321067/100‑1 (MQ=255)
                 ttACCCGGTGGGTTAAAAGCAGGCTTGGTTGCAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTaaaa                                                                                   <  1:2072070/100‑1 (MQ=255)
                   aCCCGGTGGGTTAAAAGCAGGCTTGGTTGCAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAaca                                                                                 <  2:500014/100‑1 (MQ=255)
                   aCCCGGTGGGTTAAAAGCAGGCTTGGTTGCAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAaca                                                                                 >  1:454416/1‑100 (MQ=255)
                   aCCCGGTGGGTTAAAAGCAGGCTTGGTTGCAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAac                                                                                  <  2:687527/99‑1 (MQ=255)
                     ccGGTGGGTTAAAAGCAGGCTTGGTTGCAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACAcc                                                                               <  1:97853/100‑1 (MQ=255)
                      cGGTGGGTTAAAAGCAGGCTTGGTTGCAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCg                                                                              <  1:124700/100‑1 (MQ=255)
                       ggTGGGTTAAAAGCAGGCTTGGTTGCAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGt                                                                             >  2:1151862/1‑100 (MQ=255)
                       ggTGGGTTAAAAGCAGGCTTGGTTGCAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGACGGATGCGGCGTAAAACACCGt                                                                             >  1:743447/1‑100 (MQ=255)
                           ggTTAAAAGCAGGCTTGGTTGCAGCCATAAGTTACTGTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTAccc                                                                         >  2:204375/1‑100 (MQ=255)
                            gTTAAAAGCAGGCTTGGTTGCAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCg                                                                        >  2:1160768/1‑100 (MQ=255)
                             ttAAAAGCAGGCTTGGTTGCAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCgg                                                                       <  2:444464/100‑1 (MQ=255)
                              tAAAAGCAGGCTTGGTTGCAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGc                                                                      >  1:2061088/1‑100 (MQ=255)
                              ggttcgcgctgcgtggaagaccaatattaaagacagtagcggtaagccgctgtactaataaaactccagGCCGGATGCGGCGTAAAACACCGTACCCGGc                                                                      >  1:1074822‑M1/70‑100 (MQ=255)
                               aaaaGCAGGCTTGGTTGCAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGcc                                                                     <  1:1702793/100‑1 (MQ=255)
                                ttcgcgctgcgtggaagaccaatattaaagacagtagcggtaagccgctgtactaataaaactccagGCCGGATGCGGCGTAAAACACCGTACCCGGCCt                                                                    >  1:1456839‑M1/68‑100 (MQ=255)
                                aaaGCAGGCTTGGTTGCAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCt                                                                    >  1:546921/1‑100 (MQ=255)
                                aaaGCAGGCTTGGTTGCAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAAACCGTACCCGGCCTg                                                                   <  2:1265945/100‑1 (MQ=255)
                                 aaGCATGCTTGGTTGCAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTg                                                                   <  1:2016628/100‑1 (MQ=255)
                                  aGCAGGCTTGGTTGCAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTgg                                                                  >  1:2099306/1‑100 (MQ=255)
                                   gCAGGCTTGGTTGCAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGa                                                                 <  2:788414/100‑1 (MQ=255)
                                    cAGGCTTGGTTGCAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAg                                                                <  1:1111323/100‑1 (MQ=255)
                                     aGGCTTGGTTGCAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGt                                                               <  1:1499796/100‑1 (MQ=255)
                                      ggCTTGGTTGCAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGtt                                                              <  1:1622911/100‑1 (MQ=255)
                                           tggaagaccaatattaaagacagtagcggtaagccgctgtactaataaaactccagGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTttatt                                                         >  1:216045‑M1/57‑100 (MQ=255)
                                           ggTTGCAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTttatt                                                         >  1:1615305/1‑100 (MQ=255)
                                           ggTTGCAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTttatt                                                         >  2:308312/1‑100 (MQ=255)
                                           ggTTGCAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTttatt                                                         <  1:1620412/100‑1 (MQ=255)
                                           ggTTGCAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTttatt                                                         >  1:210122/1‑100 (MQ=255)
                                            gTTGCAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTttatta                                                        <  1:796990/100‑1 (MQ=255)
                                             ttGCAGCCATAAGTTACTCTTCAGTTAAACGCGGTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTTTATTAg                                                       <  1:297787/100‑1 (MQ=255)
                                              tGCAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTTTATTAGt                                                      >  2:671533/1‑100 (MQ=255)
                                              tGCAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATGCAGCGTAGAACACCGTACCCGGCCTGGAGTTTTATTAGt                                                      >  2:1508216/1‑100 (MQ=255)
                                               gCAGCCATAATGTACTGTTCAGTTAAACGCGTTTACAAAGTCGGTTTGTAATGCCGGATGCTGCGTAAAACACCGTACCCGGCCTGGAGTTTTATTAGTa                                                     >  2:1874869/1‑100 (MQ=255)
                                               gCAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTTTATTAGTa                                                     >  1:2026639/1‑100 (MQ=255)
                                                cAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACAGTACCCGGCCTGGAGTTTTATTAGTAc                                                    >  2:1432840/1‑100 (MQ=255)
                                                    tggtcgagattctTCAGTTAAACGCGTTTACAAATTCATTTTGTAATGCCGGATTCGGCGTAAAACACCGTACCCGGCCTGGAGTTTTATTAGTACAGCg                                                <  2:2061146/90‑1 (MQ=255)
                                                      tAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTTTATTAGTACAGCGGc                                              <  1:2023626/100‑1 (MQ=255)
                                                        aGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTTTATTAGTACAGCGGCt                                             >  1:177277/1‑99 (MQ=255)
                                                        aGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGAATGCGGCGTAAAACCCCGTACCCGGCCTGGCGTTTTATTAGTACAGCAGCtt                                            >  2:1899025/1‑100 (MQ=255)
                                                        aGTTACTCTTCAGTTAAACGCGTGTACAAAGTCATTTTGTAATGCCGTATGCGGTGTAAAACACCGTGTGCGTCTTTTATTTTTATTAGTACAGCGGCt                                             <  2:893018/99‑1 (MQ=255)
                                                        aGTTACTCGTCAGTTGAACGCGTGAACAAGGTCGGTTTGTAATTCCGAATGCGGTGTAGAAAGCCGTATTCGGCTTGGAGTGTTATTAGTACAGCGGc                                              <  2:51890/98‑1 (MQ=255)
                                                        aGTTACTCGTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCAGAATGTTGGGTAAAACACCGTAGCCGGCCTGGAGGTTTGTTACTACAGCg                                                >  2:968287/1‑96 (MQ=255)
                                                               ctTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTTTATTAGTACAGCGGCTTACCGCTa                                     >  2:488858/1‑100 (MQ=255)
                                                               ctTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTTTATTAGTACAGCGGCTTACCGCTa                                     >  2:789348/1‑100 (MQ=255)
                                                                 ttaGTTACACGCGTTTACAAAGTCATTTTGTAATGCCGGACGCGGCGTACAACACCGTACCCGGCCTGGAGTTTTATTAGTACAGCGGCTTACCGCTACt                                   <  1:1219921/98‑1 (MQ=255)
                                                                  cAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTTTATTAGTACAGCGGCTTACCGCTACTg                                  <  1:1999017/100‑1 (MQ=255)
                                                                   aGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTTTATTAGTACAGCGGCTTACCGCTACTGt                                 >  1:1694673/1‑100 (MQ=255)
                                                                   aGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGCCCTGGAGTTTTATTAGTACAGCGGCTTACCGCTACTGt                                 >  1:74492/1‑100 (MQ=255)
                                                                    gTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTTTATTAGTACACAGCCTCACCGCTACTGTc                                >  2:1787189/1‑100 (MQ=255)
                                                                      tAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTTTATTAGTACAGCGGCTTACCGCTACTGTCtt                              >  1:772473/1‑100 (MQ=255)
                                                                       aaaCGCGTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTTTATTAGTACAGCGGCTTACCGCTACTGTCttt                             >  1:251581/1‑100 (MQ=255)
                                                                       aaaCGCGTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTTTATTAGTACAGCGGCTTACCGCTACTGTCttt                             >  2:2237387/1‑100 (MQ=255)
                                                                         aCGCGTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTTTATTAGTACAGCGGCTTACCGCTACTGTCTTTaa                           <  1:608863/100‑1 (MQ=255)
                                                                          cgcgTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTTTATTAGTACAGCGGCTTACCGCTACTGTCTTTAat                          <  2:100964/100‑1 (MQ=255)
                                                                            cgTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAATACACCGTACCCGGCCTGGAGTTTTATTAGTACAGCGGCTTACCGCTACTGTCTTTAatat                        <  2:333490/100‑1 (MQ=255)
                                                                             gTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTTTATTAGTACAGCGGCTTACCGCTACTGTCTTTAATAtt                       <  1:1909437/100‑1 (MQ=255)
                                                                               ttACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTTTATTAGTACAGCGGCTTACCGCTACTGTCTTTAATATTgg                     <  1:1644998/100‑1 (MQ=255)
                                                                               ttACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTTTATTAGTACAGCGGCTTACCGCTACTGTCTTTAATATTgg                     <  1:1911330/100‑1 (MQ=255)
                                                                               ttACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTTTATTAGTACAGCGGCTTACCGCTACTGTCTTTAATATTgg                     <  2:2240244/100‑1 (MQ=255)
                                                                                tACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCATACCCGGCCTGGAGTTTTAATAGTACAGCGGCTTACCGCTACTGTCTTTAATATTGGt                    >  2:1222620/1‑100 (MQ=255)
                                                                                 aCAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTTTATTAGTACAGCGGCTTACCGCTACTGTCTTTAATATTGGTc                   <  1:319806/100‑1 (MQ=255)
                                                                                  cAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTTTATTAGTACAGCGGCTTACCGCTACTGTCTTTAATATTGGTCt                  >  2:1119641/1‑100 (MQ=255)
                                                                                  cAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTTTATTAGTACAGCGGCTTACCGCTACTGTCTTTAATATTGGTCt                  >  2:1886647/1‑100 (MQ=255)
                                                                                  cAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTTTATTAGTACAGCGGCTTACCGCTACTGTCTTTAATATTGGTCt                  >  2:262183/1‑100 (MQ=255)
                                                                                  cAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTTTATTAGTACAGCGGCTTACCGCTACTGTCTTTAATATTGGTCt                  >  1:2157456/1‑100 (MQ=255)
                                                                                  cAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTTTATTAGTACAGCGGCTTACCGCTACTGTCTTTAATATTGGTCt                  <  1:2236870/100‑1 (MQ=255)
                                                                                  cAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTTTATTAGTACAGCGGCTTACCGCTACTGTCTTTAATATTGGTCt                  >  1:2248404/1‑100 (MQ=255)
                                                                                  cAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGGTTTATTAGTACAGCGGCTTACCGCTACTGTCTTTAATATTGGTCt                  >  1:2157520/1‑100 (MQ=255)
                                                                                   aaaGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTTTATTAGTACAGCGGCTTACCGCTACTGTCTTTAATATTGGTCtt                 <  1:1078480/100‑1 (MQ=255)
                                                                                      gTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTTTATTAGTACAGCGGCTTACCGCTACTGTCTTTAATATTGGTCTTCCa              >  2:1937072/1‑100 (MQ=255)
                                                                                      gTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTTTATTAGTACAGCGGCTTACCGCTACTGTCTTTAATATTGGTCTTCCa              <  2:1079582/100‑1 (MQ=255)
                                                                                       tCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTTTATTAGTACAGCGGCTTACCGCTACTGTCTTTAATATTGGTCTTCCAc             <  1:840031/100‑1 (MQ=255)
                                                                                        cATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTTTATTAGTACAGCGGCTTACGGCTACTGTCTTTAATATTGGTCTTCCAc             >  1:866085/1‑99 (MQ=255)
                                                                                        cATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTTTATTAGTACAGCGGCTTACCGCTACTGTCTTTAATATTGGTCTTCCACg            <  2:704439/100‑1 (MQ=255)
                                                                                           tttGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTTTATTAGTACAGCGGCTTACCGCTACTGTCTTTAATATTGGTCTTCCACGCAg         >  1:1459687/1‑100 (MQ=255)
                                                                                             tGTAATGCCGGATGCGGCGTAAAACACCGTACCCGTCCTGTAGTTTTATTAGTACAGTGGCTTACCGCTACTGTCTTTTTTTTTGGTCTTCCACGCAgcg       <  2:869266/100‑1 (MQ=255)
                                                                                             tGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTTTATTAGTACAGCGGCTTACCGCTACTGTCTTTAATATTGGTCTTCCACGCAgcg       >  2:1234318/1‑100 (MQ=255)
                                                                                                aaTGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTTTATTAGTACAGCGGCTTACCGCTACTGTCTTTAATATTGGTCTTCCACGCAGCGCGa    >  1:2139990/1‑100 (MQ=255)
                                                                                                aaTGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTTTATTAGTACAGCGGCTTACCGCTACTGTCTTTAATATTGGTCTTCCACGCAGCGCGa    >  1:509330/1‑100 (MQ=255)
                                                                                                  tGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTTTATTAGTACAGCGGCTTACCGCTACTGTCTTTAATATTGGTCTTCCACGCAGCGCGAAc  <  2:2060172/100‑1 (MQ=255)
                                                                                                   |                                                                                                  
AAATTATGTCGCCCTTTTTACCCGGTGGGTTAAAAGCAGGCTTGGTTGCAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGATGCGGCGTAAAACACCGTACCCGGCCTGGAGTTTTATTAGTACAGCGGCTTACCGCTACTGTCTTTAATATTGGTCTTCCACGCAGCGCGAAC  >  NC_000913/3910344‑3910541

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.