New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3620116NA (NA)7 (0.090) 3/166 NT 100% coding (925/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 3620152 0 (0.000)coding (961/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor

CCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCC  >  NC_000913/3620110‑3620251
                                          |                                                                                                   
ccTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagac                                            <  1:1029508‑M2/100‑58 (MQ=255)
ccTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCC‑‑‑‑CGcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggat                                        <  1:1963668‑M2/99‑62 (MQ=255)
  tGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGCGcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacgg                                          <  1:899456‑M2/100‑60 (MQ=255)
   gccgcgccgcTGGTGCGCTATGGCTGGACGCCACGCGGCGcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacgga                                         <  1:2143459‑M2/100‑61 (MQ=255)
   gccgcgccgcTGGTGCGCTATGGCTGGACGCCACGCGGCGcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacgga                                         <  1:817899‑M2/100‑61 (MQ=255)
      gcgccgcTGGTGCGCTATGTCTGGACGCCACGCGGCGcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgc                                      <  2:1531352‑M2/100‑64 (MQ=255)
      gcgccgcTGGTGCGCTATGGCTGGACGCCACGCGGCGcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgc                                      <  1:1554619‑M2/100‑64 (MQ=255)
                                     gcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgccgttgtcccggccatattcggtgtaacccgg       <  2:870164‑M2/100‑95 (MQ=255)
                                      cggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgccgttgtcccggccatattcggtgtaacccggc      <  2:74032‑M2/100‑96 (MQ=255)
                                      cggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgccgttgtcccggccatattcggtgtaacccggc      <  2:542733‑M2/100‑96 (MQ=255)
                                       ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcacccacacggcaaacagacggatgccgttgtcccggccatattcggtgtaacccggc      <  2:1522332‑M2/99‑96 (MQ=255)
                                        gcgcggcaggtaaattctcggggtattccgggtcgtgcgtcagccacacggcagacagacggatgccgttgtcccggccatattcggtgtaacccggcag    >  1:1812978‑M2/1‑3 (MQ=255)
                                        gcgcggcaggtaaattctccgggtattccgggtcgtgtgtcagccacacggcagacagacggatgccgttgtcccggccatattcggtgtaacccggcag    >  1:373383‑M2/1‑3 (MQ=255)
                                        gcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgccgttgtcccggccatattcggtgtaacccggcag    >  2:604589‑M2/1‑3 (MQ=255)
                                         cgcggcagttaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgccgttgtcccggccatattcggtgtaacccggcagg   >  1:1092980‑M2/1‑2 (MQ=255)
                                          gcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgccgttgtcccggccatattcggtgtaacccggcaggg  >  2:1316994‑M2/1‑1 (MQ=255)
                                          gcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgccgttgtcccggccatattcggtgtaacccggcaggg  >  1:335238‑M2/1‑1 (MQ=255)
                                          gcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgccgttgtcccggccatattcggtgtaacccggcaggg  >  1:1663907‑M2/1‑1 (MQ=255)
                                          gcggcaggtaaattctccgggtattccgggtcgtgcgtcagccaaacggcagacagacggatgccgttgtcccggccatattcggtgtaacccggcaggg  >  1:527829‑M2/1‑1 (MQ=255)
                                          gcggcaggtaaattctccgggtattccgggtcgggcgtcagccacacggcagacagacggatgccgttgtcccggccatattcggtgtaacccggcaggg  >  1:350413‑M2/1‑1 (MQ=255)
                                          |                                                                                                   
CCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCC  >  NC_000913/3620110‑3620251

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.