New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1190585NA (NA)4 (0.050) 3/166 NT NA noncoding (6/23 nt) REP106 (repetitive extragenic palindromic) element; contains 1 REP sequences REP106 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 1190596 NA (NA)noncoding (17/23 nt) REP106 (repetitive extragenic palindromic) element; contains 1 REP sequences REP106 (repetitive extragenic palindromic) element; contains 1 REP sequences

GGTTATGGGGGTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGCGGGCTTTCTCTT  >  NC_000913/1190497‑1190695
                                                                                                   |                                                                                                   
ggTTATGGGGGTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCa                                                                                                     >  2:619910/1‑100 (MQ=255)
 gTTATGGGGGTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCa                                                                                                     >  2:1016651/1‑99 (MQ=255)
 gTTATGGGGGTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCAt                                                                                                    <  2:514003‑M2/100‑2 (MQ=255)
   tATGGGGGTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCAtcc                                                                                                  <  2:1565904‑M2/100‑4 (MQ=255)
    aTGGGGGTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCAtc                                                                                                   >  2:831088‑M2/1‑96 (MQ=255)
       ggggTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCa                                                                                              <  2:204734/100‑1 (MQ=255)
          gTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTg                                                                                           >  2:916376/1‑100 (MQ=255)
           tataattaaaataaaCTAGCAGGAAGGGGAGGTAAAATGAAAAAATAAAAAGCGGATAATCTTAATAAGCAAGCCGGACATCATCGCCATCAGGCACTGa                                                                                          <  2:519948/92‑1 (MQ=255)
           tAAACATTAAATAAACTAGCGGGGAGGTGAAGTAAAGTGAAAAAATAAAAATCGCATAATCTTAATAAGCTGGCCGGTTAGCATCGCCATCCGGCACTGa                                                                                          <  2:904482/100‑1 (MQ=255)
           tAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCAc                                                                                             <  1:651982/97‑1 (MQ=255)
           tAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTg                                                                                           <  1:103912/99‑1 (MQ=255)
             aaCATTAAATAAACCAGCGGGGAGGGGATGTAAAGTGAAAAAAGAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATa                                                                                        <  2:191584/100‑1 (MQ=255)
               cATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTAAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATACGGCACTGATACg                                                                                      >  2:454821/1‑100 (MQ=255)
                aTTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAAGCCGGACAGCATCGCCATCCAGCACTGATACGa                                                                                     >  1:1773745/1‑100 (MQ=255)
                  taaataaaCCAGCGGGGAGGGGAGGTAGAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAgg                                                                                   <  1:1565915/100‑1 (MQ=255)
                  taaataaaCCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAgg                                                                                   <  1:2151345/100‑1 (MQ=255)
                   aaataaaCCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGTTATCCGGCACTGATACGAgg                                                                                   <  2:1400706/99‑1 (MQ=255)
                   aaataaaCCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGt                                                                                  >  2:249806/1‑100 (MQ=255)
                    aataaaCCAGCGGGGAGGGGAGATAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAgg                                                                                   <  2:626707/98‑1 (MQ=255)
                          ncAGCGGGGAGGGTAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTc                                                                           >  2:1386981/2‑100 (MQ=255)
                          ccAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTc                                                                           >  2:679550/1‑100 (MQ=255)
                          ccAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTc                                                                           >  1:2006010/1‑100 (MQ=255)
                          ccAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTc                                                                           >  1:1995168/1‑100 (MQ=255)
                          ccAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTc                                                                           <  1:1727439/100‑1 (MQ=255)
                          ccAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGACGGACAGCATCGACATTCGGCACTGATACGCGGCTTCTTTc                                                                           >  1:1304160/1‑100 (MQ=255)
                           cAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCa                                                                          >  2:1236186/1‑100 (MQ=255)
                             gCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGc                                                                        <  2:563118/100‑1 (MQ=255)
                               ggggaggggaGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATTCGCCACTGATCCGAGGTTTATTTCAGc                                                                        >  1:903641/1‑98 (MQ=255)
                               ggggaggggaGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCtc                                                                      >  2:1763236/1‑100 (MQ=255)
                                gggaggggagGTAAAGTAAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGc                                                                        <  2:916839/97‑1 (MQ=255)
                                    ggggaggTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCaa                                                                 >  1:1342983/1‑100 (MQ=255)
                                    ggggaggTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCaa                                                                 >  1:1384787/1‑100 (MQ=255)
                                    ggggaggTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCaa                                                                 >  1:635710/1‑100 (MQ=255)
                                     gggaggTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAAc                                                                <  1:392956/100‑1 (MQ=255)
                                     gggaggTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAAc                                                                <  2:684591/100‑1 (MQ=255)
                                           tAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGt                                                          <  2:182197/100‑1 (MQ=255)
                                            aaaGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTg                                                         <  2:812369/100‑1 (MQ=255)
                                            aaaGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTg                                                         <  2:1148381/100‑1 (MQ=255)
                                            aaaGTGAAAAAATAAAAAGCGGATAATCTCAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGGTACGAGGTTTATTTCAGCTCATCAACCATCGTg                                                         <  2:1346313/100‑1 (MQ=255)
                                             aaGTGAAAAAATAAAAAGCGGCTAATCTTATTAAGCAGGCCGGACACCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTg                                                         <  2:1510820/99‑1 (MQ=255)
                                              aGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTAAGCTCATCAACCATCGTGAt                                                       >  2:2144252/1‑100 (MQ=255)
                                              aGTAAACAAAAAAAAAGCAGATCCTCTTAACAAGAAGGCTAGACAGAATCGTCATTTGGCACTGATACGAGGTTTATTTCTGCTCATCATccgtgatgat                                                       <  2:1304154/100‑9 (MQ=255)
                                               gTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATa                                                      >  1:1096863/1‑100 (MQ=255)
                                                 gAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGTTTTATTTCAGCTCATCAACCATCGTGATAGc                                                    <  2:697532/100‑1 (MQ=255)
                                                 gAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGc                                                    >  1:327677/1‑100 (MQ=255)
                                                 gAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGc                                                    <  2:1987137/100‑1 (MQ=255)
                                                 gAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGc                                                    >  2:1832231/1‑100 (MQ=255)
                                                 gAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGc                                                    >  2:1270739/1‑100 (MQ=255)
                                                 gAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGc                                                    <  2:1776881/100‑1 (MQ=255)
                                                 gAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGc                                                    <  2:1480402/100‑1 (MQ=255)
                                                 gAAAAAATAAAAAGCGGATAATATTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGc                                                    >  2:1302635/1‑100 (MQ=255)
                                                   aaaaaTAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTc                                                  <  1:1510956/100‑1 (MQ=255)
                                                     aaaTAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCg                                                 <  1:1876672/99‑1 (MQ=255)
                                                       aTAAAAAGCTGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGAcc                                              <  2:1078052/100‑1 (MQ=255)
                                                       aTAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGAcc                                              <  1:2008787/100‑1 (MQ=255)
                                                       aTAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGAcc                                              <  1:916377/100‑1 (MQ=255)
                                                          aaaaGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCCTCAACCATCGTGATAGCTCGACCAat                                           >  2:712855/1‑100 (MQ=255)
                                                           aaaGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAata                                          >  2:1214670/1‑100 (MQ=255)
                                                            aaGCGGATAATCTTAATAAGCAGGCCGTACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAatat                                         <  2:1915984/100‑1 (MQ=255)
                                                            aaGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAatat                                         >  1:1486071/1‑100 (MQ=255)
                                                             aGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAAtata                                        >  1:1952597/1‑100 (MQ=255)
                                                             aGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAAtata                                        >  1:1736561/1‑100 (MQ=255)
                                                               cGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCAtccggcctgcttattaagattatccgctttttattttttcactttaccccccctcccccctgg                                      <  1:523325‑M2/100‑64 (MQ=255)
                                                                  aTAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTa                                    <  1:473337/99‑1 (MQ=255)
                                                                   tAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGc                                  <  1:563306/100‑1 (MQ=255)
                                                                   tAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGc                                  <  1:579563/100‑1 (MQ=255)
                                                                   tAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGATTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGc                                  <  2:1692056/100‑1 (MQ=255)
                                                                      tCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCgg                               >  1:221945/1‑100 (MQ=255)
                                                                      tCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCgg                               <  2:1286418/100‑1 (MQ=255)
                                                                       cTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCATTGATACGATGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGc                              <  2:2117631/100‑1 (MQ=255)
                                                                        ttAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCg                             >  1:1982804/1‑100 (MQ=255)
                                                                         taataaGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAACCGGCGt                            >  2:151979/1‑100 (MQ=255)
                                                                           ataaGCAGGCCGGACAGCATCGCCAtccggcctgcttattaagattatccgctttttattttttcactttacttcccctccccgctggtttatttaatgt                          <  1:1186674‑M2/100‑76 (MQ=255)
                                                                            taaGCAGGACGGACAGGATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTTGTCTAATATAGTTAGCCGGCGTc                           <  2:1008810/98‑1 (MQ=255)
                                                                               gCAGGCCGGACAGCATCGCCAtccggcctgcttattaagattatccgctttttattttttcactttacctcccctccccgctggtttatttaatgtttac                      <  1:1793841‑M2/100‑80 (MQ=255)
                                                                               gCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATc                        <  1:439458/98‑1 (MQ=255)
                                                                               gCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGc                      >  1:1430198/1‑100 (MQ=255)
                                                                                cAGGCCGGACAGCATCGCCAtacagcatgcttattaagattatacgctttttattttttcactttacctcccctacccgctggtttatttaatggttcac                     <  2:196486‑M2/100‑81 (MQ=255)
                                                                                cAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCt                     >  1:1195379/1‑100 (MQ=255)
                                                                                  ggCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCttt                   >  1:414942/1‑100 (MQ=255)
                                                                                  ggCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCttt                   <  2:1515623/100‑1 (MQ=255)
                                                                                    cctgACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTc                  <  1:1207570/96‑1 (MQ=255)
                                                                                    ccGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCa                 >  2:1647186/1‑100 (MQ=255)
                                                                                     cGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAg                <  2:1046602/100‑1 (MQ=255)
                                                                                      ggACAGCATCGCCATCCGGCACTGATACGAAGCTTATTTCAGCTCATCAACTATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCAGCGCTTTCAg                <  2:314425/99‑1 (MQ=255)
                                                                                       gACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGc              <  2:676002/100‑1 (MQ=255)
                                                                                        aCAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGCg             >  1:1509302/1‑100 (MQ=255)
                                                                                        aCAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGCg             >  1:1866720/1‑100 (MQ=255)
                                                                                         cAGCATCGCCATCGGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGCgg            <  2:62439/100‑1 (MQ=255)
                                                                                         cAGCATCGCCATCCGGAACTGGTACGAGGGTTATTTCAGCTCATCAACCATCGTTATAGCTCGACCAATATAGTTAGTCGGCGTCATCGCTTGCAgg               <  2:1310021/97‑1 (MQ=255)
                                                                                           gCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGCGGGc          <  1:1302641/100‑1 (MQ=255)
                                                                                            cATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGCGGGCt         <  1:1475539/100‑1 (MQ=255)
                                                                                             aTCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGCGGGCtt        >  1:2099597/1‑100 (MQ=255)
                                                                                                gCCATCCTGCACTGATACGAGGTATATTTCAGATCATCAACCATCGTGATAGCTCGACGAATATAGTTAGCCGGCGTAATCGTTTTCAGGCGGGCTTtct     >  2:410009/1‑100 (MQ=255)
                                                                                                gCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGCGGGCTTtct     <  1:619910/100‑1 (MQ=255)
                                                                                                 ccATACGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGCGGGCTTtctc    <  2:16629/100‑1 (MQ=255)
                                                                                                  cATCCGGCACTGATACGAGGTTTATTTCTGCTCATCAACCATCGGGATAGCTCGACCAATATAGTTAGCCGGCGTTATCGCTTTCAGGCGGGCTTTctct   <  2:2043640/100‑1 (MQ=255)
                                                                                                   aTCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGCGGGCTTTCtctt  <  1:1700597/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
GGTTATGGGGGTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGCGGGCTTTCTCTT  >  NC_000913/1190497‑1190695

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.