New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1811350	45 (0.550)	8 (0.110)	7/166	NT	15.5%	coding (417/1392 nt)	ydjN	putative transporter
	?	NC_000913	= 1811371	45 (0.590)					coding (438/1392 nt)	ydjN	putative transporter

TTTACCACGCTGATTGCGGCGCTGGTCGGTGTGCTGGTCACCAACCTGTTTGGTTTGACGGCTGAAGGTCTGGTTCAGGGTGGTGCAGAAACTGCACGTCTGAACGCCATTGAAAGTAACTATGTTGGTAAAGTCTCTGATCTGAGCGTTCCGCAGCTGGTCTTGTCCTTTATCCCGAAAAACCCGTTTGCCGATCT  >  NC_000913/1811273‑1811469                                                                                                   |                                                                                                   tttACCACGCTGATTGCGGCGCTGGTCGGTGTGCTGGTCACCAACCTGTTTGGTTTGACGGCTGAAGGTCTGGTTCAGGGTGGTGCAGAAACTGCACGTc                                                                                                   >  1:1289762‑M2/1‑99 (MQ=255)   tACCACGCTGATTGCGGCGCTGGTCGGTGTGCTGGTCACCAACCTGTTTGGTTTGACGGCTGAAGGTCTGGTTCAGGGTGGTGCAGAAACTGCACGTctg                                                                                                 <  2:330515‑M2/100‑4 (MQ=255)    aCCACGCTGATTGCGGCGCTGGTCGGTGTGCTGGTCACCAACCTGTTTGGTTTGACGGCTGAATGTCTGGTTCAGGGTGGTGCAGAAACTGCACGTctga                                                                                                >  1:1576728‑M2/1‑96 (MQ=255)     ccACGCTGATTGCGGCGCTGGTCGGTGTGCTGGTCACCAACCTGTTTGGTTTGACGGCTGAAGGTCTGGTTCAGGGTGGTGCAGAAACTGCACGTctgaa                                                                                               >  2:840694‑M2/1‑95 (MQ=255)     ccACGCTGATTGCGGCGCTGGTCGGTGTGCTGGTCACCAACCTGTTTGGTTTGACGGCTGAAGGTCTGGTTCAGGGTGGTGCAGAAACTGCACGTctgaa                                                                                               <  2:573416‑M2/100‑6 (MQ=255)      cACGCTGATTGCGGCGCTGGTCGGTGTGCTGGTCACCAACCTGTTTGGTTTGACGGCTGAAGGTCTGGTTCAGGGTGGTGCAGAAACTGCACGTctgaac                                                                                              >  2:983163‑M2/1‑94 (MQ=255)       aCGCTGATTGCGGCGCTGGTCGGTGTGCTGGTCACCAACCTGTTTGGTTTGACGGCTGAAGGTCTGGTTCAGGGTGGTGCAGAAACTGCACGTCTGAACg                                                                                             >  2:1929705/1‑100 (MQ=255)       aCGCTGATTGCGGCGCTGGTCGGTGTGCTGGTCACCAACCTGTTTGGTTTGACAGCTGAAGGTCTGGTTCAGGGTGGTGCAGAAACTGCACGTCTGAACg                                                                                             <  2:17253/100‑1 (MQ=255)          cTGATTGCGGCGCTGGTCGGTGTGCTGGTCACCAACCTGTTTGGTTTGACGGCTGAAGGTCTGGTTCAGGGTGGTGCAGAAACTGCACGTCTGAACGCCa                                                                                          >  2:207267/1‑100 (MQ=255)           tGATTGCGGCGCTGGTCGGTGTGCTGGTCACCAACCTGTTTGGTTTGACGGCTGAAGGTCTGGTTCCGGGTGGTGCAGAAACTGCACGTCTGAACGCCAt                                                                                         >  2:1935963/1‑100 (MQ=255)            gATTGCGGCGCTGGTCGGTGTGCTGGTCACCAACCTGTTTGGTTTGACGGCTGAAGGTCTGGTTCACGGTGGTGCAGAAACTGCACGTCTGAACGCCAtt                                                                                        <  2:1480854/100‑1 (MQ=255)             aTTGCGGCGCTGGTCGGTGTGCTGGTCACCAACCTGTTTGGTTTGACGGCTGAAGGTCTGGTTCAGGGTGGTGCAGAAACTGCACGTCTGAACGCCAt                                                                                         >  1:267580/1‑98 (MQ=255)               tGCGGCGCTGGTCGGTGTGCTGGTCACCAACCTGTTTGGTTTGACGGCTGAAGGTCTGGTTCAGGGTGGTGCAGAAACTGCACGTCTGAACGCCATTGaa                                                                                     <  2:564412/100‑1 (MQ=255)                gcggcgCTGGTCGGTGTGCTGGTCACCAACCTGTTTGGTTTGACGGCTGAAGGTCTGGTTCAGGGTGGTGCAGAAACTGCACGTCTGAACGCCATTGaaa                                                                                    >  2:1851817/1‑100 (MQ=255)                     gcTGGTCGGTGTGCTGGTCACCAACCTGTTTGGTTTGACGGCTGAAGGTCTGGTTCAGGGTGGTGCAGAAACTGCACGTCTGAACGCCATTGAAAGTAAc                                                                               >  2:14570/1‑100 (MQ=255)                      cTGGTCGGTGTGCTGGTCACCAACCTGTTTGGTTTGACGGCTGAAGGTCTGGTTCAGGGTGGTGCAGAAACTGCACGTCTGAACGCCATTGAAAGTAACt                                                                              >  1:1000550/1‑100 (MQ=255)                       tGGTCGGTGTGCTGGTCACCAACCTGTTTGGTTTGACGGCTGAAGGTCTGGTTCAGGGTGGTGCAGAAACTGCACGTCTGAACGCCATTGAAAGTAACTa                                                                             <  2:825876/100‑1 (MQ=255)                          tCGGTGTGCTGGTCACCAACCTGTTTGGTTTGACGGCTGAAGGTCTGGTTCAGGGTGGTGCAGAAACTGCACGTCTGAACGCCATTGAAAGTAACTATGt                                                                          >  1:842493/1‑100 (MQ=255)                               gtgCTGGTCACCAACCTGTTTGGTTTGACGGCTGAAGGTCTGGTTCAGGGTGGTGCAGAAACTGCACGTCTGAACGCCATTGAAAGTAACTATGTTGGTa                                                                     >  2:1109684/1‑100 (MQ=255)                               gtgCTGGTCACCAACCTGTTTGGTTTGACGGCTGAAGGTCTGGTTCAGGGTGGTGCAGAAACTGCACGTCTGAACGCCATTGAAAGTAACTATGTTGGTa                                                                     <  1:1063952/100‑1 (MQ=255)                                tgCTGGTCACCAACCTGTTTGGTTTGACGGCTGAAGGTCTGGTTCAGGGTGGTGCAGAAACTGCACGTCTGAACGCCATTGAAAGTAACTATGTTGGTaa                                                                    >  1:638012/1‑100 (MQ=255)                                 gCTGGTCACCAACCTGTTTGGTTTGACGGCTGAATGTCTGGGTCAGGGTGGTGCAGAAACTGCACGTCTGAAGGCCCTTGAACGTAGCTATGTTGCTaa                                                                    >  2:445231/1‑99 (MQ=255)                                 gCTGGTCACCAACCTGTTTGGTTTGACGGCTGAAGGTCTGGTTCAGGGTGGTGCAGAAACTGCACGTCTGAACGCCATTGAAAGTAACTATGTTGGTaaa                                                                   >  1:979226/1‑100 (MQ=255)                                   tGGTCACCAACCTGTTTGGTTTGACGGCTGAAGGTCTGGTTCAGGGTGGTGCAGAAACTGCACGTCTGAACGCCATTGAAAGTAACTATGTTGGTAAAGt                                                                 >  1:867770/1‑100 (MQ=255)                                    ggTCACCAACCTGTTTGGTTTGACGGCTGAAGGTCTGGTTCAGGGTGGTGCAGAAACTGCACGTCTGAACGCCATTGAAAGTAACTATGTTGGTAAAGtc                                                                <  2:630088/100‑1 (MQ=255)                                      tCACCAACCTGTTTGGTTTGACGGCTGAAGGTCTGGTTCAGGGTGGTGCAGAAACTGCACGTCTGAACGCCATTGAAAGTAACTATGTTGGTAAAGtctc                                                              <  1:1929718/100‑1 (MQ=255)                                       cACCAACCTGTTTGGTTTGACGGCTGAAGGTCTGGTTCAGGGTGGTGCAGAAACTGCACGTCTGAACGCCATTGAAAGTAACTATGTTGGTAAAGTctct                                                             >  1:831046/1‑100 (MQ=255)                                            aCCTGTTTGGTTTGACGGCTGAAGGTCTGGTTCAGGGTGGTGCAGAAACTGCACGTCTGAACGCCATTGAAAGTAACTATGTTGGTAAAGTCtctgatct                                                        <  1:388446/100‑1 (MQ=255)                                                gtttggtttgACGGCTGAAGGTCTGGTTCAGGGTGGTGCAGAAACTGCACGTCTGAACGCCATTGAAAGTAACTATGTTGGTAAAGTCTCTGATCTGAGc                                                    <  1:1867710/100‑1 (MQ=255)                                                gtttggtttgACGGCTGAAGGTCTGGTTCAGGGTGGTGCAGAAACTGCACGTCTGAACGCCATTGAAAGTAACTATGTTGGTAAAGTCTCTGATCTGAGc                                                    <  1:982010/100‑1 (MQ=255)                                                     gtttgACGGCTGAAGGTCTGGTTCAGGGTGGTGCAGAAACTGCACGTCTGAACGCCATTGAAAGTAACTATGTTGGTAAAGTCTCTGATCTGAGCGTTcc                                               >  2:1922317/1‑100 (MQ=255)                                                      tttgACGGCTGAAGGTCTGGTTCAGGGTGGTGCAGAAACTGCACGTCTGAACGCCATTGAAAGTAACTATGTTGGTAAAGTCTCTGATCTGAGCGTTCCg                                              >  2:1647296/1‑100 (MQ=255)                                                       ttgACGGCTGAAGGTCTGGTTCAGGGTGGTGCAGAAACTGCACGTCTGAACGCCATTGAAAGTAACTATGTTGGTAAAGTCTCTGATCTGAGCGTTCCGc                                             >  2:321833/1‑100 (MQ=255)                                                         gACGGCTGAAGGTCTGGTTCAGGGTGGTGCAGAAACTGCACGTctgaaccagaccttcagccgtcaaaccaaacaggttggtgaccagcacaccgaccag                                           <  2:344475‑M2/100‑58 (MQ=255)                                                             gCTGAAGGTCTGGTTCAGGGTGGTGCAGAAACTGCACGTCTGAACGCCATTGAAAGTAACTATGTTGGTAAAGTCTCTGATCTGAGCGTTCCGCAGCTgg                                       >  1:2009398/1‑100 (MQ=255)                                                              cTGAAGGTCTGGTTCAGGGTGGTGCAGAAACTGCACGTctgaaccagaccttcagccgtcaaaccaaacaggttggtgaccagcacaccgaccagcgccg                                      >  1:344474‑M2/1‑38 (MQ=255)                                                              cTGAAGGTCTGGTTCAGGGTGGTGCAGAAACTGCACGTCTGAACGCCATTGAAAGTAACTATGTTGGTAAAGTCTCTGATCTGAGCGTTCCGCAGCTGGt                                      <  1:1330554/100‑1 (MQ=255)                                                                gAAGGTCTGGTTCAGGGTGGTGCAGAAACTGCACGTCTGAACGCCATTGAAAGTAACTATGTTGGTAAAGTCTCTGATCTGAGCGTTCCGCAGCTGGTCt                                    <  2:867769/100‑1 (MQ=255)                                                                gAAGGTCTGGTTCAGGGTGGTGCAGAAACTGCACGTCTGAACGCCATTGAAAGTAACTATGTTGGTAAAGTCTCTGATCTGAGCGTTCCGCAGCTGGTCt                                    <  1:436335/100‑1 (MQ=255)                                                                   ggTCTGGTTCAGGGTGGTGCAGAAACTGCACGTctgaaccagaccttcagccgtcaaaccaaacaggttggtgaccagcacaccgaccagcgccgcaatc                                 <  2:1273446‑M2/100‑68 (MQ=255)                                                                   ggTCTGGTTCAGGGTGGTGCAGAAACTGCACGTctgaaccagaccttcagccgtcaaaccaaacaggttggtgaccagcacaccgaccagcgccgcaatc                                 <  2:1273465‑M2/100‑68 (MQ=255)                                                                   ggTCTGGTTCAGGGTGGTGCAGAAACTGCACGTCTGAACGCCATTGAAAGTAACTATGTTGGTAAAGTCTCTGATCTGAGCGTTCCGCAGCTGGTCTTGt                                 >  1:1387168/1‑100 (MQ=255)                                                                    gTCTGGTTCAGGGTGGTGCAGAAACTGCACGTctgaaccagaccttcagccgtcaaaccaaacaggttggtgaccagcacaccgaccagcgccgcaatca                                <  1:264743‑M2/100‑69 (MQ=255)                                                                     tCTGGTTCAGGGTGGTGCAGAAACTGCACGTctgaaccagaccttcagccgtcaaaccaaacaggttggtgaccagcacaccgaccagcgccgcaatcag                               <  2:257844‑M2/100‑70 (MQ=255)                                                                     tCTGGTTCAGGGTGGTGCAGAAACTGCACGTCTGAACGCCATTGAAAGTAACTATGTTGGTAAAGTCTCTGATCTGAGCGTTCCGCAGCTGGTCTTGTcc                               <  1:573415/100‑1 (MQ=255)                                                                     tCTGGTTCAGGGTGGTGCAGAAACTGCACGTCTGAACGCCATTGAAAGTAACTATGTTGGTAAAGTCTCTGATCTGAGCGTTCCGCAGCTGGTCTTGTcc                               <  2:1821750/100‑1 (MQ=255)                                                                        ggTTCAGGGTGGTGCAGAAACTGCACGTCTGAACGCCATTGAAAGTAACTATGTTGGTAAAGTCTCTGATCTGAGCGTTCCGCAGCTGGTCTTGTCCttt                            >  1:1368046/1‑100 (MQ=255)                                                                            cAGGGTGGTGCAGAAACTGCACGTCTGAACGCCATTGAAAGTAACTATGTTGGTAAAGTCTCTGATCTGAGCGTTCCGCAGCTGGTCTTGTCCTTTATcc                        <  2:694249/100‑1 (MQ=255)                                                                            cAGGGTGGTGCAGAAACTGCACGTCTGAACGCCATTGAAAGTAACTATGTTGGTAAAGTCTCTGATCTGAGCGTTCCGCAGCTGGTCTTGTCCTTTATcc                        >  1:1985498/1‑100 (MQ=255)                                                                             tgggTGGTGCAGAAACTGCACGTCTGAACGCCATTGAAAGTAACTATGTTGGTAAAGTCTCTGATCTGAGCGTTCCGCAGCTGGTCTTGTCCTTTATccc                       <  1:1897381/99‑1 (MQ=255)                                                                             aGGGTGGTGCAGAAACTGCACGTCTGAACGCCATTGAAAGTAACTATGTTGGTAAAGTCTCTGATCTGAGCGTTCCGCAGCTGGTCTTGTCCTTTATccc                       <  1:330514/100‑1 (MQ=255)                                                                              gggTGGTGCAGAAACTGCACCAccctgaaccagaccttcagccgtcaaaccaaacaggttggtgaccagcacaccgaccagcgccgcaatcagcgtggta                      <  1:708419‑M2/100‑79 (MQ=255)                                                                                gtggtgCAGAAACTGCACGTCTGAACGCCATTGAAAGTAACTATGTTGGTAAAGTCTCTGATCTGAGCGTTCCGCAGCTGGTCTTGTCCTTTATCCCGaa                    <  2:532171/100‑1 (MQ=255)                                                                                gtggtgCAGAAACTGCACCAccctgaaccagaccttcagccgtcaaaccaaacaggttggtgaccagcacaccgaccagcgccgcaatcagcgtggtaaa                    <  1:981883‑M2/100‑81 (MQ=255)                                                                                  gttgCAGAAACTGCACGTCTGAACGCCATTGAAAGTAACTATGTTTGTAAAGTCTCTGATCTGAGCGTTCCGCAGCTGGTCTTGTCCTTTATCCCGaaaa                  <  2:546954/98‑1 (MQ=255)                                                                                  ggtgCAGAAACTGCACGTCTGAACGCCATTGAAAGTAACTATGTTGGTAAAGTCTCTGATCTGAGCGTTCCGCAGCTGGTCTTGTCCTTTATCCCGaaaa                  >  2:1655027/1‑100 (MQ=255)                                                                                   gtgCAGAAACTGCACGTCTGAACGCCATTGAAAGTAACTATGTTGGTAAAGTCTCTGATCTGAGCGTTCCGCAGCTGGTCTTGTCCTTTATCCCGaaaaa                 >  2:314922/1‑100 (MQ=255)                                                                                    tgCAGAAACTGCACGTCTGAACGCCATTGAAAGTAACTATGTTGGTAAAGTCTCTGATCTGAGCGTTCCGCAGCTGGTCTTGTCCTTTATCCCGAAAAAc                >  2:462171/1‑100 (MQ=255)                                                                                    tgCAGAAACTGCACGTCTGAACGCCATTGAAAGTAACTATGTTGGTAAAGTCTCTGATCTGAGCGTTCCGCAGCTGGTCTTGTCCTTTATCCCGAAAAAc                >  1:827577/1‑100 (MQ=255)                                                                                    tgCAGAAACTGCACGTCTGAACGCCATTGAAAGTAACTATGTTGGTAAAGTCTCTGATCTGAGCGTTCCGCAGCTGGTCTTGTCCTTTATCCCGAAAAAc                >  1:1896120/1‑100 (MQ=255)                                                                                    tgCAGAAACTGCACGTCTGAACGCCATTGAAAGTAACTATGTTGGTAAAGTCTCTGATCTGAGCGTTCCGCAGCTGGTCTTGTCCTTTATCCCGAAAAAc                >  2:2136385/1‑100 (MQ=255)                                                                                           aCTGCACGTCTGAACGCCATTGAAAGTAACTATGTTGGTAAAGTCTCTGATCTGAGCGTTCCGCAGCTGGTCTTGTCCTTTATCCCGAAAAACCCGttt          <  1:886669/99‑1 (MQ=255)                                                                                           aCTGCACGTCTGAACGCCATTGAAAGTAACTATGTTGGTAAAGTCTCTGATCTGAGCGTTCCGCAGCTGGTCTTGTCCTTTATCCCGAAAAACCCGTTTg         <  2:622548/100‑1 (MQ=255)                                                                                             tGCACGTCTGAACGCCATTGAAAGTAACTATGTTGGTAAAGTCTCTGACCTGAGCGTTCCGCAGCTGGTCTTGTCCTTTATCCCGaaaaa                 >  1:82374/1‑90 (MQ=255)                                                                                               cACGTCTGAACGCCATTGAAAGTAACTATGTTGGTAAAGTCTCTGATCTGAGCGTTCCGCAGCTGGTCTTGTCCTTTATCCCGAAAAACCCGTTTGCCGa     <  2:2093028/100‑1 (MQ=255)                                                                                                aCGTCTGAACGCCATTGAAAGTAACTATGTTGGTAAAGTCTCTGATCTGAGCGTTCCGCAGCTGGTCTTGTCCTTTATCCCGAAAAACCCGTTTGCCGAt    <  1:1902329/100‑1 (MQ=255)                                                                                                aCGTCTGAACGCCATTGAAAGTAACTATGTTGGTAAAGTCTCTGATCTGAGCGTTCCGCAGCTGGTCTTGTCCTTTATCCCGAAAAACCCGTTTGCCGAt    <  1:637945/100‑1 (MQ=255)                                                                                                aCGTCTGAACGCCATTGAAAGTAACTATGTTGGCAAAGTCTCTGATCTGAGCGTTCCGCAGCTGGTCTTGACCTTTATCCCGAAAAACACGTTTGcc       >  2:1343260/1‑97 (MQ=255)                                                                                                   tCTGAACGCCATTGAAAGTAACTATGTTGGTAAAGTCTCTGATCTGAGCGTTCCGCAGCTGGTCTTGTCCTTTATCCCGAAAAACCCGTTTGCCGATCt  >  1:246669/1‑99 (MQ=255)                                                                                                   |                                                                                                   TTTACCACGCTGATTGCGGCGCTGGTCGGTGTGCTGGTCACCAACCTGTTTGGTTTGACGGCTGAAGGTCTGGTTCAGGGTGGTGCAGAAACTGCACGTCTGAACGCCATTGAAAGTAACTATGTTGGTAAAGTCTCTGATCTGAGCGTTCCGCAGCTGGTCTTGTCCTTTATCCCGAAAAACCCGTTTGCCGATCT  >  NC_000913/1811273‑1811469

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.