mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.26.1
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_000913 | 2,590,771 | 0 | C→G | 16.7% | 10.7 ‑1.1 ‑0.6 | 30 | intergenic (+63/+36) | acrD/ypfM | aminoglycoside/multidrug efflux system/stress‑induced small enterobacterial protein |
| * | NC_000913 | 867,822 | 0 | T→C | 16.2% | 10.5 ‑1.0 ‑0.9 | 37 | V101V (GTT→GTC) | gsiA | glutathione ABC transporter ATPase |
| * | NC_000913 | 3,875,521 | 0 | T→C | 20.5% | 10.5 ‑4.2 ‑0.0 | 40 | A28A (GCT→GCC) | yidX | putative lipoprotein |
| * | NC_000913 | 3,762,466 | 0 | G→C | 100.0% | 1.5 | 1 | G95A (GGC→GCC) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
| * | NC_000913 | 1,433,873 | 0 | C→T | 100.0% | 1.0 | 2 | intergenic (‑199/+118) | pinR/ynaE | Rac prophage; putative site‑specific recombinase/cold shock protein, Rac prophage |
| * | NC_000913 | 3,942,238 | 0 | A→C | 100.0% | 1.0 | 1 | noncoding (431/1542 nt) | rrsC | 16S ribosomal RNA of rrnC operon |
| * | NC_000913 | 1,468,112 | 0 | T→G | 100.0% | 0.5 | 1 | T239P (ACG→CCG) | insD1 | IS2 transposase TnpB |
| * | NC_000913 | 1,571,069 | 0 | G→T | 100.0% | ‑0.0 | 1 | A326E (GCA→GAA) | gadB | glutamate decarboxylase B, PLP‑dependent |
| Marginal mixed read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_000913 | 774,623 | 0 | A→T | 15.8% | 10.4 0.0 ‑0.7 | 38 | intergenic (+21/‑129) | ybgE/ybgC | putative inner membrane protein in cydABX‑ybgE operon/acyl‑CoA thioester hydrolase |
| * | NC_000913 | 774,633 | 0 | G→T | 14.3% | 12.6 0.0 ‑0.7 | 42 | intergenic (+31/‑119) | ybgE/ybgC | putative inner membrane protein in cydABX‑ybgE operon/acyl‑CoA thioester hydrolase |
| * | NC_000913 | 774,634 | 0 | C→G | 14.3% | 13.4 0.0 ‑0.5 | 42 | intergenic (+32/‑118) | ybgE/ybgC | putative inner membrane protein in cydABX‑ybgE operon/acyl‑CoA thioester hydrolase |
| * | NC_000913 | 774,635 | 0 | T→G | 14.6% | 12.5 0.0 ‑0.2 | 41 | intergenic (+33/‑117) | ybgE/ybgC | putative inner membrane protein in cydABX‑ybgE operon/acyl‑CoA thioester hydrolase |
| * | NC_000913 | 774,636 | 0 | C→A | 17.1% | 12.5 0.0 ‑0.0 | 41 | intergenic (+34/‑116) | ybgE/ybgC | putative inner membrane protein in cydABX‑ybgE operon/acyl‑CoA thioester hydrolase |
| * | NC_000913 | 774,637 | 0 | C→G | 14.6% | 13.6 0.0 ‑0.3 | 41 | intergenic (+35/‑115) | ybgE/ybgC | putative inner membrane protein in cydABX‑ybgE operon/acyl‑CoA thioester hydrolase |
| * | NC_000913 | 774,638 | 0 | A→C | 14.6% | 11.9 0.0 ‑0.3 | 41 | intergenic (+36/‑114) | ybgE/ybgC | putative inner membrane protein in cydABX‑ybgE operon/acyl‑CoA thioester hydrolase |
| Marginal new junction evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 437107 = | NA (NA) | 3 (0.070) | 3/416 | 7.0 | 6.4% | coding (519/519 nt) | pgpA | phosphatidylglycerophosphatase A |
| ? | NC_000913 | 933756 = | 44 (1.070) | coding (533/3990 nt) | ftsK | DNA translocase at septal ring sorting daughter chromsomes | |||||
| * | ? | NC_000913 | 1888472 = | 53 (1.280) | 3 (0.080) | 3/396 | 6.8 | 6.2% | coding (1275/1686 nt) | fadD | acyl‑CoA synthetase (long‑chain‑fatty‑acid‑‑CoA ligase) |
| ? | NC_000913 | 1888616 = | 41 (1.050) | coding (1131/1686 nt) | fadD | acyl‑CoA synthetase (long‑chain‑fatty‑acid‑‑CoA ligase) | |||||
| * | ? | NC_000913 | 3040949 = | 32 (0.780) | 3 (0.080) | 3/400 | 6.8 | 9.3% | coding (122/267 nt) | sdhE | flavinator of succinate dehydrogenase; antitoxin of CptAB toxin‑antitoxin pair |
| ? | NC_000913 | 3040995 = | 28 (0.710) | coding (76/267 nt) | sdhE | flavinator of succinate dehydrogenase; antitoxin of CptAB toxin‑antitoxin pair | |||||
| * | ? | NC_000913 | 3593269 = | 39 (0.940) | 3 (0.070) | 3/408 | 6.9 | 7.2% | coding (169/714 nt) | livF | branched‑chain amino acid ABC transporter ATPase |
| ? | NC_000913 | 3593337 = | 39 (0.970) | coding (101/714 nt) | livF | branched‑chain amino acid ABC transporter ATPase | |||||