mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.26.1
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_000913 | 4,168,766 | 0 | A→C | 100.0% | 1.4 | 1 | noncoding (126/2904 nt) | rrlB | 23S ribosomal RNA of rrnB operon |
| * | NC_000913 | 2,289,112 | 0 | G→T | 100.0% | 0.9 | 1 | L324M (CTG→ATG) | insH1 | IS5 transposase and trans‑activator |
| * | NC_000913 | 4,038,932 | 0 | T→G | 100.0% | 0.5 | 1 | noncoding (1414/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon |
| * | NC_000913 | 1,528,491 | 0 | T→C | 100.0% | 0.4 | 1 | pseudogene (590/2037 nt) | rhsE | pseudogene, Rhs family |
| * | NC_000913 | 1,528,499 | 0 | G→C | 100.0% | 0.4 | 1 | pseudogene (598/2037 nt) | rhsE | pseudogene, Rhs family |
| * | NC_000913 | 1,528,502 | 0 | A→C | 100.0% | 0.4 | 1 | pseudogene (601/2037 nt) | rhsE | pseudogene, Rhs family |
| * | NC_000913 | 3,763,877 | 0 | C→G | 100.0% | 0.3 | 1 | R565R (CGC→CGG) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
| * | NC_000913 | 3,583,786 | 0 | T→A | 100.0% | ‑0.1 | 1 | V37D (GTC→GAC) | insB1 | IS1 transposase B |
| * | NC_000913 | 3,583,787 | 0 | C→G | 100.0% | ‑0.1 | 1 | V37V (GTC→GTG) | insB1 | IS1 transposase B |
| * | NC_000913 | 3,583,939 | 0 | G→T | 100.0% | ‑0.1 | 1 | S88I (AGC→ATC) | insB1 | IS1 transposase B |
| * | NC_000913 | 3,583,984 | 0 | G→A | 100.0% | ‑0.1 | 1 | W103* (TGG→TAG) | insB1 | IS1 transposase B |
| * | NC_000913 | 3,583,967 | 0 | A→C | 100.0% | ‑0.2 | 1 | I97I (ATA→ATC) | insB1 | IS1 transposase B |
| * | NC_000913 | 3,583,983 | 0 | T→C | 100.0% | ‑0.2 | 1 | W103R (TGG→CGG) | insB1 | IS1 transposase B |
| Marginal mixed read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_000913 | 228,688 | 0 | T→. | 13.0% | 15.6 0.0 ‑0.2 | 47 | intergenic (+26/‑68) | rrlH/rrfH | 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon |
| * | NC_000913 | 1,344,036 | 0 | G→C | 13.2% | 10.2 0.0 ‑0.2 | 38 | T104S (ACT→AGT) | yciT | global regulator of transcription; DeoR family |
| * | NC_000913 | 3,714,168 | 0 | A→. | 10.0% | 11.1 0.0 ‑0.3 | 51 | coding (2227/2334 nt) | bisC | biotin sulfoxide reductase |
| * | NC_000913 | 3,946,620 | 0 | A→C | 32.8% | 55.6 ‑0.6 ‑0.1 | 58 | intergenic (+13/‑80) | rrlC/rrfC | 23S ribosomal RNA of rrnC operon/5S ribosomal RNA of rrnC operon |
| Marginal new junction evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2299934 = | 65 (1.530) | 4 (0.100) | 4/410 | 5.6 | 5.8% | coding (327/696 nt) | napG | ferredoxin‑type protein |
| ? | NC_000913 | 2299988 = | 67 (1.610) | coding (273/696 nt) | napG | ferredoxin‑type protein | |||||
| * | ? | NC_000913 | 523413 = | 31 (0.730) | 3 (0.070) | 3/404 | 6.1 | 8.7% | coding (153/4281 nt) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 523501 = | 33 (0.810) | coding (241/4281 nt) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 1114641 = | 48 (1.130) | 3 (0.070) | 3/404 | 6.1 | 6.3% | coding (850/1227 nt) | mdtG | putative drug efflux system protein |
| ? | NC_000913 | 1114706 = | 43 (1.050) | coding (785/1227 nt) | mdtG | putative drug efflux system protein | |||||
| * | ? | NC_000913 | 1837442 = | 27 (0.640) | 3 (0.070) | 3/404 | 6.1 | 10.5% | coding (231/1536 nt) | ynjC | putative ABC transporter permease |
| ? | NC_000913 | 1837533 = | 25 (0.610) | coding (322/1536 nt) | ynjC | putative ABC transporter permease | |||||
| * | ? | NC_000913 | = 2848873 | 67 (1.580) | 3 (0.070) | 3/406 | 6.2 | 4.6% | coding (369/1827 nt) | hycC | hydrogenase 3, membrane subunit |
| ? | NC_000913 | = 2848945 | 60 (1.460) | coding (297/1827 nt) | hycC | hydrogenase 3, membrane subunit | |||||
| * | ? | NC_000913 | = 3786374 | 35 (0.830) | 3 (0.070) | 3/406 | 6.2 | 8.0% | coding (1115/1545 nt) | gpmM | phosphoglycero mutase III, cofactor‑independent |
| ? | NC_000913 | = 3786407 | 35 (0.850) | coding (1148/1545 nt) | gpmM | phosphoglycero mutase III, cofactor‑independent | |||||
| * | ? | NC_000913 | 4360854 = | 35 (0.830) | 3 (0.070) | 3/412 | 6.2 | 7.8% | coding (1081/1539 nt) | cadC | cadBA operon transcriptional activator |
| ? | NC_000913 | 4360899 = | 36 (0.860) | coding (1036/1539 nt) | cadC | cadBA operon transcriptional activator | |||||