mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.26.1
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_000913 | 526,070 | 0 | A→C | 100.0% | 1.6 | 3 | D937A (GAT→GCT) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913 | 1,469,473 | 0 | C→T | 100.0% | 0.7 | 1 | T39I (ACT→ATT) | insI1 | IS30 transposase |
| * | NC_000913 | 2,514,475 | 0 | G→T | 100.0% | 0.7 | 1 | A49S (GCT→TCT) | insL1 | IS186 transposase |
| * | NC_000913 | 3,943,206 | 0 | C→G | 100.0% | 0.4 | 1 | noncoding (1399/1542 nt) | rrsC | 16S ribosomal RNA of rrnC operon |
| * | NC_000913 | 4,035,532 | 0 | A→G | 100.0% | 0.4 | 1 | noncoding (2/1542 nt) | rrsA | 16S ribosomal RNA of rrnA operon |
| * | NC_000913 | 526,055 | 0 | T→C | 100.0% | 0.2 | 4 | L932P (CTC→CCC) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913 | 575,598 | 0 | G→T | 100.0% | 0.2 | 2 | V52V (GTC→GTA) | insH1 | IS5 transposase and trans‑activator |
| * | NC_000913 | 3,583,972 | 0 | T→A | 100.0% | ‑0.1 | 1 | M99K (ATG→AAG) | insB1 | IS1 transposase B |
| * | NC_000913 | 4,171,277 | 0 | T→G | 100.0% | ‑0.1 | 1 | noncoding (2637/2904 nt) | rrlB | 23S ribosomal RNA of rrnB operon |
| * | NC_000913 | 4,171,434 | 0 | C→T | 100.0% | ‑0.1 | 1 | noncoding (2794/2904 nt) | rrlB | 23S ribosomal RNA of rrnB operon |
| * | NC_000913 | 4,508,385 | 0 | C→A | 100.0% | ‑0.1 | 1 | R78L (CGT→CTT) | insI1 | IS30 transposase |
| * | NC_000913 | 4,171,257 | 0 | T→G | 100.0% | ‑0.2 | 1 | noncoding (2617/2904 nt) | rrlB | 23S ribosomal RNA of rrnB operon |
| * | NC_000913 | 4,171,269 | 0 | T→G | 100.0% | ‑0.2 | 1 | noncoding (2629/2904 nt) | rrlB | 23S ribosomal RNA of rrnB operon |
| * | NC_000913 | 4,171,275 | 0 | A→G | 100.0% | ‑0.2 | 1 | noncoding (2635/2904 nt) | rrlB | 23S ribosomal RNA of rrnB operon |
| * | NC_000913 | 3,425,031 | 0 | C→A | 100.0% | ‑0.5 | 1 | noncoding (1753/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,425,032 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (1752/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,425,034 | 0 | C→A | 100.0% | ‑0.5 | 1 | noncoding (1750/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,425,035 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (1749/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,425,036 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (1748/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,425,038 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (1746/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,425,039 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (1745/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| Marginal mixed read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_000913 | 228,688 | 0 | T→. | 14.8% | 22.6 ‑0.3 ‑0.3 | 56 | intergenic (+26/‑68) | rrlH/rrfH | 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon |
| * | NC_000913 | 3,946,620 | 0 | A→C | 60.7% | 70.4 ‑0.9 ‑0.0 | 57 | intergenic (+13/‑80) | rrlC/rrfC | 23S ribosomal RNA of rrnC operon/5S ribosomal RNA of rrnC operon |
| Marginal new junction evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2241478 = | 46 (1.100) | 3 (0.070) | 3/400 | 5.9 | 6.1% | coding (191/1041 nt) | galS | galactose‑ and fucose‑inducible galactose regulon transcriptional isorepressor; mgl operon transcriptional repressor; autorepressor |
| ? | NC_000913 | 2241527 = | 49 (1.220) | coding (142/1041 nt) | galS | galactose‑ and fucose‑inducible galactose regulon transcriptional isorepressor; mgl operon transcriptional repressor; autorepressor | |||||
| * | ? | NC_000913 | = 2819845 | 73 (1.740) | 3 (0.080) | 3/398 | 5.9 | 4.1% | coding (2167/2631 nt) | alaS | alanyl‑tRNA synthetase |
| ? | NC_000913 | = 2819896 | 70 (1.750) | coding (2116/2631 nt) | alaS | alanyl‑tRNA synthetase | |||||
| * | ? | NC_000913 | = 2823905 | 92 (2.190) | 3 (0.070) | 3/406 | 5.9 | 3.4% | coding (442/498 nt) | pncC | nicotinamide‑nucleotide amidohydrolase; NMN amidohydrolase |
| ? | NC_000913 | = 2823997 | 81 (1.990) | coding (350/498 nt) | pncC | nicotinamide‑nucleotide amidohydrolase; NMN amidohydrolase | |||||
| * | ? | NC_000913 | = 2897430 | 67 (1.600) | 3 (0.070) | 3/404 | 5.9 | 4.6% | coding (441/1338 nt) | ygcS | putative MFS sugar transporter; membrane protein |
| ? | NC_000913 | = 2897467 | 60 (1.480) | coding (404/1338 nt) | ygcS | putative MFS sugar transporter; membrane protein | |||||
| * | ? | NC_000913 | = 4064537 | 23 (0.550) | 3 (0.080) | 3/396 | 5.8 | 12.3% | coding (1230/1404 nt) | yihO | putative sulphoquinovose importer |
| ? | NC_000913 | = 4064583 | 21 (0.530) | coding (1184/1404 nt) | yihO | putative sulphoquinovose importer | |||||