| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | DH1 | 163,135 | Δ95,041 bp | hokA–yhhJ | 83 genes hokA, cspA, yiaG, yiaF, ghrB, yiaD, bisC, yiaC, tag, yhjY, yhjX, eptB, ECDH1_RS00855, ECDH1_RS00860, dppA, ECDH1_RS00870, dppB, dppC, dppD, dppF, yhjV, ECDH1_RS00900, ldrD, bcsG, bcsF, bcsE, yhjR, ECDH1_RS00930, bcsA, bcsB, bcsZ, bcsC, yhjK, dctA, yhjJ, kdgK, ECDH1_RS00975, yhjH, yhjG, yhjE, yhjD, yhjC, yhjB, treF, yhjA, gadA, gadX, gadW, mdtF, mdtE, ECDH1_RS01045, gadE, hdeD, hdeA, hdeB, yhiD, dctR, slp, slp, insH1, ECDH1_RS01095, arsC, arsB, arsR, ECDH1_RS01115, ECDH1_RS01120, gor, rlmJ, prlC, rsmJ, tppB, uspA, uspB, pitA, yhiN, yhiM, ECDH1_RS01175, ECDH1_RS01180, ECDH1_RS01185, yhiJ, yhiI, rbbA, yhhJ |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | DH1 | 163135 | 258175 | 95041 | 602 [3] | [3] 605 | hokA–yhhJ | 83 genes hokA, cspA, yiaG, yiaF, ghrB, yiaD, bisC, yiaC, tag, yhjY, yhjX, eptB, ECDH1_RS00855, ECDH1_RS00860, dppA, ECDH1_RS00870, dppB, dppC, dppD, dppF, yhjV, ECDH1_RS00900, ldrD, bcsG, bcsF, bcsE, yhjR, ECDH1_RS00930, bcsA, bcsB, bcsZ, bcsC, yhjK, dctA, yhjJ, kdgK, ECDH1_RS00975, yhjH, yhjG, yhjE, yhjD, yhjC, yhjB, treF, yhjA, gadA, gadX, gadW, mdtF, mdtE, ECDH1_RS01045, gadE, hdeD, hdeA, hdeB, yhiD, dctR, slp, slp, insH1, ECDH1_RS01095, arsC, arsB, arsR, ECDH1_RS01115, ECDH1_RS01120, gor, rlmJ, prlC, rsmJ, tppB, uspA, uspB, pitA, yhiN, yhiM, ECDH1_RS01175, ECDH1_RS01180, ECDH1_RS01185, yhiJ, yhiI, rbbA, yhhJ |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | DH1 | = 163134 | 3 (0.010) | 590 (1.190) | 252/298 | 0.0 | 99.5% | intergenic (‑51/‑29) | insJ/hokA | transposase/protein HokA |
| ? | DH1 | 258176 = | 3 (0.010) | intergenic (+92/+73) | yhhJ/yhhI | inner membrane transport permease YhhJ/H repeat‑associated protein yhhI | |||||
Only 100 of 602 total aligned reads displayed.
CACCAAAACGTGCCGAGATGATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTCGTTGGAAATCAACACAGGAGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACTGTGTGAATTGCATATTAAACAGGAGAGTTATGAGCTGG > DH1/162984‑163283 | cacCAAAACGTGCCGAGATGATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACT < 2:1401948‑M1/151‑1 (MQ=255) acCAAAACGTGCCGAGATGATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTg > 4:1633167‑M1/1‑150 (MQ=255) acCAAAACGTCCCGAGATGATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGCCTTCAAGGCGCATTTCAAAAGGGAATTTTGGCTATCACATATTAGGGGCTATACCAAATCATCGTCAAACAAAAAGGGTGCAGTACATACtg > 6:1385173/1‑150 (MQ=255) aaaaCGTGCCGAGATGATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaac > 6:419853‑M1/1‑147 (MQ=255) gCCGAGATGATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTCGTTGGAAATc < 3:1165744/151‑1 (MQ=255) gagaTGATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaa < 8:855338‑M1/151‑15 (MQ=255) gagaTGATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgaccccca > 6:886186‑M1/1‑137 (MQ=255) gatgatCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaa < 4:1848569‑M1/151‑17 (MQ=255) atgatCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaac < 8:1960172‑M1/151‑18 (MQ=255) gatCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacct < 5:723‑M1/151‑20 (MQ=255) atCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccacaaaacctg > 4:984907‑M1/1‑131 (MQ=255) ccTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctgg > 1:1818612‑M1/1‑129 (MQ=255) ccTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctgg < 6:1790506‑M1/150‑22 (MQ=255) ccTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATCGCTGCACTACATACTcaactgaccaccaaaacctcc > 2:694231‑M1/1‑129 (MQ=255) tAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATAATgaactgacccccaaaaccttgacagt > 7:1113842‑M1/1‑125 (MQ=255) aaCCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtt > 5:26875‑M1/1‑124 (MQ=255) aaCCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagt < 8:1329846‑M1/150‑27 (MQ=255) aCCATCATGAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagttt < 6:1170309‑M1/151‑29 (MQ=255) catcatCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttc > 3:247544‑M1/1‑121 (MQ=255) catcaGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagtt < 3:1265534‑M1/151‑34 (MQ=255) catcaGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagt < 5:1339232‑M1/150‑33 (MQ=255) atcaGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagtta < 8:1598477‑M1/151‑35 (MQ=255) atcaGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagtt > 5:109349‑M1/1‑117 (MQ=255) caGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaac < 4:888953‑M1/151‑37 (MQ=255) tgtgAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggc > 3:1700051‑M1/1‑111 (MQ=255) gAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggcttt < 2:1930012‑M1/151‑44 (MQ=255) agtagtGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggcttttt < 6:235198‑M1/151‑46 (MQ=255) gtagtGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttg > 4:1950524‑M1/1‑105 (MQ=255) tagtGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttg > 3:586989‑M1/1‑104 (MQ=255) agtGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgat < 7:1766980‑M1/151‑49 (MQ=255) gATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatac < 3:1117575‑M1/150‑51 (MQ=255) aTTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactc < 8:505125‑M1/151‑53 (MQ=255) aCTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctg > 7:1383193‑M1/1‑92 (MQ=255) tCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtat > 4:1502233‑M1/1‑89 (MQ=255) tCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgta < 5:1487489‑M1/150‑62 (MQ=255) cAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtatt < 5:420247‑M1/151‑64 (MQ=255) cAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtatt > 7:880443‑M1/1‑88 (MQ=255) aGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattc > 7:197487‑M1/1‑86 (MQ=255) ggCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattc > 5:1642199‑M1/1‑85 (MQ=255) cTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggc > 2:521327‑M1/1‑81 (MQ=255) ttttCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggca > 3:1477429‑M1/1‑80 (MQ=255) tttCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggca > 8:128142‑M1/1‑79 (MQ=255) tCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggcattttgatactcagtcctgtattcaggcca > 2:1672252‑M1/1‑77 (MQ=255) cAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagatt > 5:1769431‑M1/1‑76 (MQ=255) aaaTGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattac < 7:1607701‑M1/151‑78 (MQ=255) aaGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacg > 2:1307566‑M1/1‑73 (MQ=255) tgggtATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgccccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacg > 6:1436344‑M1/2‑72 (MQ=255) gggTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagattcagttaaccggctttttcatactcagtcctgtattcagcgcaacattacga > 2:106425‑M1/1‑71 (MQ=255) gTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaag < 3:996360‑M1/151‑83 (MQ=255) gTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagttacagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaa > 1:1888091‑M1/1‑69 (MQ=255) ttGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgc > 1:1412179‑M1/1‑64 (MQ=255) ggCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgct < 4:541218‑M1/150‑89 (MQ=255) gCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctcc > 7:662517‑M1/1‑61 (MQ=255) tttGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctcccc > 1:1334833‑M1/1‑59 (MQ=255) tttGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctcccc > 1:970218‑M1/1‑59 (MQ=255) tGAAATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATAATgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcacgctccccgc > 3:1339174‑M1/1‑57 (MQ=255) gACATATTAGTGGCTATTACATTTCATCGTCCAACAAAATGGGTGCCGTACATACTgaactgaccaccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgca < 5:657718‑M1/151‑96 (MQ=255) aCATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcac < 1:100068‑M1/151‑97 (MQ=255) aCATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgca > 3:119995‑M1/1‑55 (MQ=255) aatattAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaag < 8:1028995‑M1/150‑98 (MQ=255) atatTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaagg > 3:37136‑M1/1‑53 (MQ=255) atTAGGTGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggac < 6:1021888‑M1/151‑101 (MQ=255) tAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAGATACTgaactgacctccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggact < 6:636766‑M1/150‑102 (MQ=255) tAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactg > 7:227311‑M1/1‑49 (MQ=255) tAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggact < 8:801064‑M1/150‑102 (MQ=255) ggggCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgac > 7:50454‑M1/1‑47 (MQ=255) cTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgccaggactgacgcc > 4:115595‑M1/1‑43 (MQ=255) cTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgcc > 3:859418‑M1/1‑43 (MQ=255) cTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgcc > 4:769025‑M1/1‑43 (MQ=255) tATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgcc > 4:1340670‑M1/1‑42 (MQ=255) aTTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgcc > 5:511379‑M1/1‑41 (MQ=255) tCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagat > 2:629925‑M1/1‑39 (MQ=255) ccATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagata < 1:833571‑M1/150‑113 (MQ=255) ccATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagat > 4:351914‑M1/1‑38 (MQ=255) cATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagt > 5:1973518‑M1/1‑37 (MQ=255) cATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagt > 8:340388‑M1/1‑37 (MQ=255) aTTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtt > 3:499998‑M1/1‑36 (MQ=255) aTTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtt < 6:1692744‑M1/151‑116 (MQ=255) ttCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagttt < 7:1301013‑M1/150‑117 (MQ=255) ttCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcatgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatacttac > 2:88947‑M1/1‑34 (MQ=255) tCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtttct > 3:675850‑M1/1‑33 (MQ=255) ccAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtttctgtccat < 1:1631854‑M1/150‑125 (MQ=255) caacaaAATTGGTGCATTACATTCTtaactttcccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtttctgtccatgg < 8:1706699‑M1/151‑127 (MQ=255) caacaaAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtttctgtccatgg < 5:1816755‑M1/151‑127 (MQ=255) aacaaAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtttctgtccatggc < 5:35532‑M1/151‑128 (MQ=255) caaAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtttctgtccatggctg < 8:1469614‑M1/151‑130 (MQ=255) aaaTGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtttctgtccatggctgct < 4:440817‑M1/151‑132 (MQ=255) aTGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtttctgtccatggctgcttt > 7:344615‑M1/1‑18 (MQ=255) tGGGTGCAGTACATACTgaactgccccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtttctgtccatggctgctttt > 2:415329‑M1/1‑17 (MQ=255) gggTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtttctgtccatggctgctttt < 8:644382‑M1/150‑135 (MQ=255) gggTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagccagctccccgcaaggactgacgccagatagtttctgtccatggctgcttttc > 5:1151331‑M1/1‑16 (MQ=255) gTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtttctgtccatggctgcttttcgcatctt < 2:1226568‑M1/151‑143 (MQ=255) gTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtttctgtccatggctgcttttcgcatctt > 4:1747671‑M1/1‑9 (MQ=255) tACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtttctgtccatggctgcttttcgcatcttacgtc > 2:1880632‑M1/1‑4 (MQ=255) tACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtttctgtccatggctgcttttcgcatcttacgtc > 7:712628‑M1/1‑4 (MQ=255) tACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtttctgtccatggctgcttttcgcatcttacgtc > 7:101394‑M1/1‑4 (MQ=255) tACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtttctgtccatggctgcttttcgcatcttacgtc > 1:525069‑M1/1‑4 (MQ=255) tACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtttctgtccatggctgcttttcgcatcttacgtc > 4:257531‑M1/1‑4 (MQ=255) acttaactgacccccaaaacctgtacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtttctgtccatggctgcttttcgcatcttacgtc < 8:1115876‑M1/150‑148 (MQ=255) ctgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtttctgtccatggctgcttttcgcatcttacgtctt > 5:809842‑M1/1‑2 (MQ=255) | CACCAAAACGTGCCGAGATGATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTCGTTGGAAATCAACACAGGAGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACTGTGTGAATTGCATATTAAACAGGAGAGTTATGAGCTGG > DH1/162984‑163283 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |