New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3583428 =NA (NA)240 (0.550) 164/298 2.3 46.2% noncoding (1/768 nt) IS1 repeat region
?NC_000913 = 4542049 279 (0.640)coding (13/597 nt) fimE tyrosine recombinase/inversion of on/off regulator of fimA

Only 100 of 531 total aligned reads displayed.

TATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACC  >  NC_000913/4541899‑4542199
                                                                                                                                                      |                                                                                                                                                      
tATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAAcgtc                                                                                                                                                        >  2:1488902/1‑151 (MQ=255)
   gATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGtt                                                                                                                                                     <  1:238894/151‑1 (MQ=255)
    atatTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGtt                                                                                                                                                     >  5:68668/1‑150 (MQ=255)
     tatTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCggtg                                                                                                                                                    <  1:51930‑M2/150‑5 (MQ=255)
      atTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCggtgat                                                                                                                                                  >  2:409383‑M2/1‑145 (MQ=255)
         tAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCggtgatggt                                                                                                                                               <  6:729142‑M2/151‑10 (MQ=255)
          aaTGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTGTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCggtgatgct                                                                                                                                               >  1:1728678‑M2/1‑141 (MQ=255)
           aTGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCggtgatgctgc                                                                                                                                             <  6:840286‑M2/151‑12 (MQ=255)
             gTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCggtgatgctgcc                                                                                                                                            >  4:813055‑M2/1‑138 (MQ=255)
              tAATTGACTGATAGCCACATCACTCGGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCggtgatgctgcca                                                                                                                                           >  7:936983‑M2/1‑137 (MQ=255)
              tAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCggtgatgctgcca                                                                                                                                           <  1:1651731‑M2/150‑14 (MQ=255)
                aTTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTa                                                                                                                                         >  4:904930/1‑150 (MQ=255)
                 ttGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCGTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCggtgatgatgccaagtt                                                                                                                                       <  2:1104820‑M2/151‑18 (MQ=255)
                  tGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTaa                                                                                                                                        >  3:324466/1‑149 (MQ=255)
                   gACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAaaga                                                                                                                                     <  4:706157/151‑1 (MQ=255)
                   gACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAaag                                                                                                                                      <  7:804361/150‑1 (MQ=255)
                    aCTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAaagaa                                                                                                                                    <  8:1247027/151‑1 (MQ=255)
                     gtgATTGCCACATGAGTCCGTGGGTGGTTATCTTTTTATCTATTTGGCTATTTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCggtgatgctgccaacttactg                                                                                                                                   >  6:1372189‑M2/2‑130 (MQ=255)
                       gATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCggtgatgctgccaacttactgat                                                                                                                                 >  5:1205669‑M2/1‑128 (MQ=255)
                        aTAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGtt                                                                                                                                 >  8:1110259/1‑150 (MQ=255)
                             cacaTCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCggtgatgctgccaacttactgatttagtg                                                                                                                           >  3:1002331‑M2/1‑122 (MQ=255)
                              acaTCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCggtgatgctgccaacttactgatttagtgt                                                                                                                          >  3:1306431‑M2/1‑121 (MQ=255)
                               caTCTCTCCGTGTGTGGTTATCTTTTTATCTATTGGTCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCggtgatgctgccaacttactgatttagtgta                                                                                                                         >  2:743311‑M2/1‑120 (MQ=255)
                               caTCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCat                                                                                                                         >  3:894271/1‑151 (MQ=255)
                                aTCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTCTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCggtgatgctgccaacttactgatttagtgtat                                                                                                                        >  6:900758‑M2/1‑119 (MQ=255)
                                  cACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCatga                                                                                                                       <  3:1426351/150‑1 (MQ=255)
                                      ccGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGGCGTTATCTTACCGGTAAAGAAGTTCAGGCCatgatgga                                                                                                                   <  7:1360801/150‑3 (MQ=255)
                                        gtgtgtGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGc                                                                                                                <  2:233543/151‑1 (MQ=255)
                                          gtgtgGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCggtgatgctgccaacttactgatttagtgtatgatggtgtt                                                                                                               >  4:1142071‑M2/1‑109 (MQ=255)
                                            gtgGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCggtgatgctgccaacttactgatttagtgtatgatggtgttttt                                                                                                            >  6:124456‑M2/1‑107 (MQ=255)
                                              ggTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGttt                                                                                                           <  2:1663511/150‑1 (MQ=255)
                                              ggTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTg                                                                                                          >  2:309015/1‑151 (MQ=255)
                                                 tATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggt                                                                                                       <  4:1586984‑M2/151‑50 (MQ=255)
                                                 tATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggt                                                                                                       <  7:1674080‑M2/151‑50 (MQ=255)
                                                     tttttATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctc                                                                                                   <  2:884502‑M2/151‑54 (MQ=255)
                                                      ttttATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctcc                                                                                                  <  2:1422208‑M2/151‑55 (MQ=255)
                                                          aTCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAAc                                                                                              >  6:1002093/1‑151 (MQ=255)
                                                               tttggCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTGTGTTAGGAGTTCTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGTTTTGTTACGGGGCAACGTGa                                                                                          <  3:633474/147‑1 (MQ=255)
                                                                tGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGc                                                                                        >  7:1177242/1‑151 (MQ=255)
                                                                    cTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgttt                                                                                    <  6:48487‑M2/151‑69 (MQ=255)
                                                                     aaatTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttc                                                                                   >  7:1505621‑M2/2‑82 (MQ=255)
                                                                      aaTTTTGACCGATTGAGGTTTCCTATAGGTCTTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttct                                                                                  >  1:920604‑M2/1‑81 (MQ=255)
                                                                      aaTTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCag                                                                                     >  8:206848/1‑148 (MQ=255)
                                                                            gACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTg                                                                            <  7:549140/151‑1 (MQ=255)
                                                                               cGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgt                                                                         >  7:1396718‑M2/1‑72 (MQ=255)
                                                                                    gAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctc                                                                    <  4:1339233‑M2/151‑85 (MQ=255)
                                                                                    gAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctc                                                                    >  5:527856‑M2/1‑67 (MQ=255)
                                                                                       gTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGt                                                                 <  1:1000509/151‑1 (MQ=255)
                                                                                           ccTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttca                                                             >  1:1263046‑M2/1‑60 (MQ=255)
                                                                                            cTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGc                                                             >  3:230246/1‑150 (MQ=255)
                                                                                              ataGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagct                                                          <  8:852531‑M2/151‑95 (MQ=255)
                                                                                              ataGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCtt                                                                        >  1:1348078/1‑137 (MQ=255)
                                                                                                aGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctac                                                        <  8:1366861‑M2/151‑97 (MQ=255)
                                                                                                  gTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactg                                                      >  7:1604665‑M2/1‑53 (MQ=255)
                                                                                                  gTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCgg                                                      >  7:381044/1‑151 (MQ=255)
                                                                                                  gTAATCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactg                                                      >  4:947813‑M2/1‑53 (MQ=255)
                                                                                                   tATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGTCCATGATGCAGGCGGTTTGTTACGGGGAAACGGGAGCCAGAGATTATTGTCTTATTATGTTGGAATATCGGc                                                     >  7:1051253/1‑151 (MQ=255)
                                                                                                    attcattcAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtcccgcctgttcagctactgac                                                    <  8:1179038‑M2/151‑101 (MQ=255)
                                                                                                    attcattcAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGc                                                     >  8:488489/1‑150 (MQ=255)
                                                                                                    attcattcAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGc                                                     >  8:131060/1‑150 (MQ=255)
                                                                                                    attcattcAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGc                                                     <  3:1167936/150‑1 (MQ=255)
                                                                                                      tcattcaAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacg                                                   >  1:1421985‑M2/1‑49 (MQ=255)
                                                                                                       cattcaAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATgg                                                 >  1:1106237/1‑151 (MQ=255)
                                                                                                          tcaAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGa                                               <  6:1602514/150‑1 (MQ=255)
                                                                                                            aaaTATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggt                                            <  4:199283‑M2/151‑109 (MQ=255)
                                                                                                            aaaTATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGTCAACGGGAGCCAGAGATTATTGTCTTATTATGTTGGCATATCGGCATGGGATGc                                            >  2:664664/1‑151 (MQ=255)
                                                                                                             aaTATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtg                                           <  6:1477471‑M2/151‑110 (MQ=255)
                                                                                                                 tatCTCTGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTAtt                                       >  5:1036865/1‑151 (MQ=255)
                                                                                                                  atCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCggtgatgctaccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgta                                       >  6:593425‑M2/1‑37 (MQ=255)
                                                                                                                  atCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTAttt                                      >  4:1047587/1‑150 (MQ=255)
                                                                                                                    ctcAGTTAGGAGTACTACTATTGTGAGTAAACGTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacg                                    <  8:418454‑M2/151‑117 (MQ=255)
                                                                                                                     tcAGTTAGGAGTACTACTATTGTGAGTAAACGTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacgg                                   <  1:312322‑M2/151‑118 (MQ=255)
                                                                                                                      cAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTa                                      <  8:607777/147‑1 (MQ=255)
                                                                                                                      cAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGa                                  <  4:390423/151‑1 (MQ=255)
                                                                                                                            ggAGTACTACTATTGTGAGTAAACGTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagc                            >  5:744147‑M2/1‑27 (MQ=255)
                                                                                                                             gAGTACTATTATTGTTTGTTATGGTCTTTATCTTTCCGGTAAAGAAGTTCAGGCCATGTTGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGTCATGGGATGCGTATTAGTGAACTGCtt                           <  6:1679857/151‑1 (MQ=255)
                                                                                                                              aGTACTACTATTGTGAGTAAACGTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcac                          <  5:411121‑M2/151‑127 (MQ=255)
                                                                                                                               gTACTACTATTGTGAGTAAACGTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcacc                         >  7:628511‑M2/1‑24 (MQ=255)
                                                                                                                                tactacTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGAt                        >  2:1350142/1‑151 (MQ=255)
                                                                                                                                 actactATTGTGAGTAAACGTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccg                        >  2:101146‑M2/1‑22 (MQ=255)
                                                                                                                                   tactaTTGTGAGTAAACGTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccg                     <  6:957079‑M2/151‑132 (MQ=255)
                                                                                                                                   tactaTTGTGAGTAAACGTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccg                     <  4:1480254‑M2/151‑132 (MQ=255)
                                                                                                                                     agtcattacctAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCa                   <  1:1560257/141‑1 (MQ=255)
                                                                                                                                      gtcattacctAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCAt                  >  8:708489/10‑151 (MQ=255)
                                                                                                                                       aTTGTGAGTAAACGTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccgga                   >  6:296107‑M2/1‑16 (MQ=255)
                                                                                                                                        cattacctAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTa                <  3:50096/144‑1 (MQ=255)
                                                                                                                                         tgtgAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTa                <  7:764675/150‑1 (MQ=255)
                                                                                                                                         tgtgAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTa                <  5:248066/150‑1 (MQ=255)
                                                                                                                                           tgAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATc              >  5:112188/1‑150 (MQ=255)
                                                                                                                                           tacctAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATc              >  2:1150168/5‑150 (MQ=255)
                                                                                                                                           tacctAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATc              >  5:1516724/5‑150 (MQ=255)
                                                                                                                                            acctAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATc              >  5:1396963/4‑149 (MQ=255)
                                                                                                                                             aGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAgg           <  6:1157619/151‑1 (MQ=255)
                                                                                                                                               tAAAGGTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctcgagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgc          >  2:538564‑M2/1‑8 (MQ=255)
                                                                                                                                                aaaCGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGgac         <  1:754213/150‑1 (MQ=255)
                                                                                                                                                 aaCGTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctat       >  3:1588847‑M2/1‑6 (MQ=255)
                                                                                                                                                 aaCGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGgacct       <  7:285834/151‑1 (MQ=255)
                                                                                                                                                   cgtcgtTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGgaccttg     >  7:482547/1‑151 (MQ=255)
                                                                                                                                                    gtcgtTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGgaccttga    <  4:564022/151‑1 (MQ=255)
                                                                                                                                                      cgtTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGgaccttgac   <  8:1603145/150‑1 (MQ=255)
                                                                                                                                                      |                                                                                                                                                      
TATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACC  >  NC_000913/4541899‑4542199

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.