Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,673,557 Δ120 bp intergenic (‑56/‑237) mdtJ ← / → tqsA multidrug efflux system transporter/pheromone AI‑2 transporter

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1673557 1673676 120 500 [0] [0] 500 mdtJ/tqsA multidrug efflux system transporter/pheromone AI‑2 transporter

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 16735560 (0.000)487 (1.010) 237/296 0.0 100% intergenic (‑55/‑357) mdtJ/tqsA multidrug efflux system transporter/pheromone AI‑2 transporter
?NC_000913 1673677 = 0 (0.000)intergenic (‑176/‑236) mdtJ/tqsA multidrug efflux system transporter/pheromone AI‑2 transporter

Only 100 of 500 total aligned reads displayed.

CCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTC  >  NC_000913/1673407‑1673706
                                                                                                                                                     |                                                                                                                                                      
 cATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtg                                                                                                                                                      <  7:1845986‑M1/151‑3 (MQ=255)
 cATTTCCCGCACTGACGCTCGCCCATTTCCTTCACAGCGGACCGGTAATTTCTGGAGCAATAGCCAGACCTTATAAAATGCAATATATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtg                                                                                                                                                      <  1:1080920‑M1/151‑3 (MQ=255)
  aTTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgt                                                                                                                                                     >  2:370943‑M1/1‑148 (MQ=255)
    ttCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgta                                                                                                                                                    <  5:684338‑M1/150‑5 (MQ=255)
     tCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtag                                                                                                                                                   <  6:609507‑M1/150‑6 (MQ=255)
     tCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgt                                                                                                                                                     >  5:1328613‑M1/1‑145 (MQ=255)
      cccTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaa                                                                                                                                                 <  1:747878‑M1/151‑8 (MQ=255)
               aCGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtc                                                                                                                                        >  8:266686‑M1/1‑135 (MQ=255)
                  cTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctg                                                                                                                                     >  6:352264‑M1/1‑132 (MQ=255)
                   tCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctg                                                                                                                                     >  4:315633‑M1/1‑131 (MQ=255)
                    cGCCCATATCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctg                                                                                                                                     <  5:1159115‑M1/149‑20 (MQ=255)
                        cATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaa                                                                                                                               <  8:768729‑M1/151‑26 (MQ=255)
                        cATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataac                                                                                                                                           <  8:1081520‑M1/139‑14 (MQ=255)
                         aTTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaat                                                                                                                              <  4:1922699‑M1/151‑27 (MQ=255)
                         aTTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaat                                                                                                                              <  3:1627849‑M1/151‑27 (MQ=255)
                          tttCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaatt                                                                                                                             >  6:1721302‑M1/1‑124 (MQ=255)
                           ttCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattg                                                                                                                            >  4:1795201‑M1/1‑123 (MQ=255)
                                      cGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatatt                                                                                                                 >  1:872744‑M1/1‑112 (MQ=255)
                                      cGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatatt                                                                                                                 <  4:662995‑M1/151‑40 (MQ=255)
                                       gTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatatta                                                                                                                <  3:70645‑M1/151‑41 (MQ=255)
                                         aCCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattaca                                                                                                              <  6:1837014‑M1/151‑43 (MQ=255)
                                          ccGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaa                                                                                                             <  8:478048‑M1/151‑44 (MQ=255)
                                             gTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaatt                                                                                                           >  5:177049‑M1/1‑105 (MQ=255)
                                                aTTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatcc                                                                                                       <  3:1223189‑M1/151‑50 (MQ=255)
                                                  ttCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccg                                                                                                      <  4:419117‑M1/150‑51 (MQ=255)
                                                      gTAGCAATAGCCAGACCTAATAAAATCGAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgca                                                                                                    <  5:1933538‑M1/148‑53 (MQ=255)
                                                      gTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtg                                                                                                 >  3:1739144‑M1/1‑96 (MQ=255)
                                                      gTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacggcctgaacaaattgtccataatattacaattatccgcagtg                                                                                                 <  3:1502919‑M1/151‑56 (MQ=255)
                                                         gCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttg                                                                                              >  5:378462‑M1/1‑93 (MQ=255)
                                                         gCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttg                                                                                              >  7:549019‑M1/1‑93 (MQ=255)
                                                          cAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgg                                                                                             <  7:94219‑M1/151‑60 (MQ=255)
                                                          cAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgc                                                                                             <  6:1462335‑M1/151‑60 (MQ=255)
                                                             tAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttc                                                                                          >  8:1261388‑M1/1‑89 (MQ=255)
                                                             tAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaatagtccataatattacaattatccgcagtgttgcttc                                                                                          >  4:746498‑M1/1‑89 (MQ=255)
                                                              aGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttct                                                                                         <  8:903959‑M1/151‑64 (MQ=255)
                                                                ccAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcg                                                                                       >  5:1586362‑M1/1‑86 (MQ=255)
                                                                ccAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcg                                                                                       <  3:1807296‑M1/151‑66 (MQ=255)
                                                                ccAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcg                                                                                       >  4:166709‑M1/1‑86 (MQ=255)
                                                                 cAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgt                                                                                      >  7:1503777‑M1/1‑85 (MQ=255)
                                                                    aCCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcat                                                                                   >  7:1399610‑M1/1‑82 (MQ=255)
                                                                     ccTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatc                                                                                  >  2:897293‑M1/1‑81 (MQ=255)
                                                                       taataaAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgc                                                                                >  8:59112‑M1/1‑79 (MQ=255)
                                                                       taataaAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgc                                                                                >  8:336317‑M1/1‑79 (MQ=255)
                                                                       taataaAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgc                                                                                >  7:1312944‑M1/1‑79 (MQ=255)
                                                                        aataaAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcg                                                                               >  6:768152‑M1/1‑78 (MQ=255)
                                                                           aaaaTCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggat                                                                            >  1:277047‑M1/1‑75 (MQ=255)
                                                                            aaaTCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatg                                                                           >  2:1179900‑M1/1‑74 (MQ=255)
                                                                             aaTCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatg                                                                           >  7:1785880‑M1/1‑73 (MQ=255)
                                                                                     aaataTACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtc                                                                  >  4:852908‑M1/1‑65 (MQ=255)
                                                                                     aaataTACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtc                                                                  <  2:824513‑M1/151‑87 (MQ=255)
                                                                                     aaataTACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgt                                                                   <  4:1041754‑M1/150‑86 (MQ=255)
                                                                                        tataCATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctc                                                               >  6:732840‑M1/1‑62 (MQ=255)
                                                                                                  ccTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttga                                                      >  2:1440143‑M1/1‑52 (MQ=255)
                                                                                                     tctcCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacac                                                  >  5:838848‑M1/1‑49 (MQ=255)
                                                                                                     tctcCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacac                                                  >  7:744145‑M1/1‑49 (MQ=255)
                                                                                                     tctcCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaaca                                                   <  2:1748243‑M1/150‑102 (MQ=255)
                                                                                                            cAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgat                                           <  7:400948‑M1/151‑110 (MQ=255)
                                                                                                            cAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgat                                           >  1:1908697‑M1/1‑42 (MQ=255)
                                                                                                             aaGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatt                                          >  7:1656302‑M1/1‑41 (MQ=255)
                                                                                                             aaGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatt                                          >  3:886116‑M1/1‑41 (MQ=255)
                                                                                                             aaGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatt                                          >  8:1914055‑M1/1‑41 (MQ=255)
                                                                                                              agagAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgattt                                         <  3:1067673‑M1/151‑112 (MQ=255)
                                                                                                               gagaATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttg                                        >  6:1610305‑M1/1‑39 (MQ=255)
                                                                                                                agaATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgt                                       >  3:227731‑M1/1‑38 (MQ=255)
                                                                                                                 gaATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgt                                       >  8:1195992‑M1/1‑37 (MQ=255)
                                                                                                                     tattTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcat                                  >  4:485527‑M1/1‑33 (MQ=255)
                                                                                                                     tattTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatca                                   <  1:152830‑M1/150‑118 (MQ=255)
                                                                                                                          tAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagctt                             >  4:1151127‑M1/1‑28 (MQ=255)
                                                                                                                           aaTTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagctta                            <  4:1303691‑M1/151‑125 (MQ=255)
                                                                                                                           aaTTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagctta                            <  1:460968‑M1/151‑125 (MQ=255)
                                                                                                                           aaTTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagctt                             <  8:662783‑M1/150‑124 (MQ=255)
                                                                                                                           aaTTTTCGCTTAATTCAGCGAAACCAAtctagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagctt                             <  6:1160410‑M1/150‑124 (MQ=255)
                                                                                                                           aaTTTTCGCTTAATTCAGCGAAACAAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagctta                            <  3:1293640‑M1/151‑125 (MQ=255)
                                                                                                                            aTTATCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagcttaa                           <  1:636306‑M1/151‑126 (MQ=255)
                                                                                                                             ttttCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagctta                            >  6:916068‑M1/1‑25 (MQ=255)
                                                                                                                             ttttCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtcttgcttctcgtcatcgcggaagataaatatcatcggtagttgaacacgactgatttctatcatagcttaa                           >  1:1227789‑M1/1‑25 (MQ=255)
                                                                                                                                 cGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagcttaagaatt                      >  1:69389‑M1/1‑21 (MQ=255)
                                                                                                                                  gCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagcttaagaatta                     <  2:1895495‑M1/151‑132 (MQ=255)
                                                                                                                                  gCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagcttaagaatta                     <  1:1623320‑M1/151‑132 (MQ=255)
                                                                                                                                    ttAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagcttaagaattaac                   >  2:1033296‑M1/1‑18 (MQ=255)
                                                                                                                                     tAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagcttaagaattaac                   <  8:1624811‑M1/150‑134 (MQ=255)
                                                                                                                                      aaTTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtgcataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagcgtaagaattaact                  >  5:26284‑M1/1‑16 (MQ=255)
                                                                                                                                      aaTTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagcttaagaattaact                  >  3:403229‑M1/1‑16 (MQ=255)
                                                                                                                                       aTTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagcttaagaattaactca                <  3:58973‑M1/151‑137 (MQ=255)
                                                                                                                                       aTTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagcttaagaattaactca                <  1:135112‑M1/151‑137 (MQ=255)
                                                                                                                                         tCAGCTAAACCAAtttagaaaataacttcatgaacaaattgtccataatattacaattatccgcagtgttgcttctcctcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagcttaagaattaactcaa               <  2:662733‑M1/150‑138 (MQ=255)
                                                                                                                                          cAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagcttaagaattaactcaaa              >  8:1417721‑M1/1‑12 (MQ=255)
                                                                                                                                          cAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagcttaagaattaactcaaa              <  2:1596460‑M1/150‑139 (MQ=255)
                                                                                                                                           aGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagcttaagaattaactcaaaat            >  8:428969‑M1/1‑11 (MQ=255)
                                                                                                                                            ccgAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgattgtatcatagcttaagaattaactcaaaatat           <  6:851118‑M1/150‑142 (MQ=255)
                                                                                                                                             cGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagcttaagaattaactcaaaatat          <  1:1812729‑M1/151‑143 (MQ=255)
                                                                                                                                              gAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagcttaagaattaactcaaaatatt         >  3:627292‑M1/1‑8 (MQ=255)
                                                                                                                                                aaCCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagcttaagaattaactcaaaatatttt       >  2:1830457‑M1/1‑6 (MQ=255)
                                                                                                                                                aaCCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagcttaagaattaactcaaaatatttt       <  7:1559503‑M1/151‑146 (MQ=255)
                                                                                                                                                   cAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagcttaagaattaactcaaaatattttcac    >  4:977494‑M1/1‑3 (MQ=255)
                                                                                                                                                   cAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagcttaagaattaactcaaaatattttcac    >  7:1098671‑M1/1‑3 (MQ=255)
                                                                                                                                                    aatgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagcttaagaattaactcaaaatattttcact   >  4:1490915‑M1/1‑2 (MQ=255)
                                                                                                                                                    aatgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagcttaagaattaactcaaaatattttcact   >  4:1424272‑M1/1‑2 (MQ=255)
                                                                                                                                                     atgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagcttaagaattaactcaaaatattttcactt  <  5:1266140‑M1/151‑151 (MQ=255)
                                                                                                                                                     atgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagcttaagaattaactcaaaatattttcactt  <  2:1393364‑M1/151‑151 (MQ=255)
                                                                                                                                                     |                                                                                                                                                      
CCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTC  >  NC_000913/1673407‑1673706

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: