| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1395262 | NA (NA) | 109 (0.690) | 71/150 | 1.0 | 100% | intergenic (+146/‑127) | trs54/ynaJ | IS5 transposase/hypothetical protein |
| ? | NC_000913 | = 1976518 | 0 (0.000) | intergenic (‑297/+24) | b1892/insB5 | FlhD/IS1 protein InsB | |||||
Only 100 of 109 total aligned reads displayed.
AAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1395188‑1395262‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCCTCCGTTGTATGTGC < NC_000913/1976518‑1976445 AAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCT > 1:3510706/1‑76AAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCT > 2:2114098/1‑76AAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCT > 2:2137299/1‑76AAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCT < 1:17886/76‑1AAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCT > 2:2228810/1‑76AAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCT < 2:2816010/76‑1AAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCT > 1:2792786/1‑76AAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCT > 2:4024465/1‑76AAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCT > 1:4661409/1‑76AAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCCCTTATTCGCACCTTCCT > 2:5137082/1‑76AAAATCGGCTCAAACATGAAGAAATGAAATGACTAAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCT > 2:3048865/1‑76AAAAGCGGCTCAAACATGAAGAAATGAAAGGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCT < 2:2847023/76‑1 AAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTT > 2:217704/1‑76 AAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTT < 2:2511548/76‑1 AATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTA < 1:3395263/76‑1 AATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTA < 1:3574783/76‑1 AATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTA > 1:2748371/1‑76 AATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTA < 2:4639095/76‑1 ATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAA < 1:36077/76‑1 TCGGCTGAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAG < 1:1233257/76‑1 TCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAG > 2:4195021/1‑76 CGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGT < 2:4091459/76‑1 GGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTA < 1:213826/76‑1 CAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTG < 2:4703234/76‑1 CAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTG < 1:4402965/76‑1 AAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGA > 2:5049788/1‑76 AACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAG < 2:4918115/76‑1 AACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAG > 2:1377732/1‑76 ACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGT < 2:1901745/76‑1 CATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTG > 2:1140007/1‑76 CATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTG < 1:638071/76‑1 CATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTG > 1:3240657/1‑76 CATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTG < 1:2600292/76‑1 ATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGT > 2:919871/1‑76 TGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTCAGTACTTGAGCGTT > 2:454343/1‑76 GAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTT < 2:1543494/76‑1 GAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTT > 1:179780/1‑76 AAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTT > 1:3106573/1‑76 AAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTT < 2:3014048/76‑1 AAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTT < 1:2696413/76‑1 AGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTG < 2:1090649/76‑1 AGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTG < 1:3530581/76‑1 AAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTG > 1:3216872/1‑76 AATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGT < 1:3273172/76‑1 AATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGT > 2:2814145/1‑76 ATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTG > 2:526016/1‑76 TGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGA < 1:5770031/76‑1 GAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGAT < 1:1312025/76‑1 AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATC > 2:5360735/1‑76 AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATC > 1:2510578/1‑76 AATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCT < 2:4283832/76‑1 ATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTG > 2:5399015/1‑76 TGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGC > 2:5497551/1‑76 GACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCA > 2:4442469/1‑76 ACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCAT > 1:2804722/1‑76 CTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATC < 1:2692864/76‑1 TGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCA < 2:5397196/76‑1 AGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACG > 1:2046367/1‑76 AGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACG > 1:5523292/1‑76 TCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCA > 2:4975650/1‑76 TCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCA < 1:4278765/76‑1 AGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATT > 2:2219442/1‑76 CCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTAT < 1:899197/76‑1 CCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTAT < 1:1569037/76‑1 CGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATT > 1:2778702/1‑76 CGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATT < 2:4822776/76‑1 GAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTG > 1:2148296/1‑76 GAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTG > 1:2219491/1‑76 GAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTG > 1:5808570/1‑76 AGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGA > 2:4999853/1‑76 GAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAA < 2:3339877/76‑1 AGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAA > 1:2790904/1‑76 ATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCG > 2:2411052/1‑76 CCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGC > 1:4508884/1‑76 CCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCC > 2:729784/1‑76 CCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCC > 1:1414223/1‑76 CGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCC > 2:664113/1‑76 GCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCC < 1:5523923/76‑1 GCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCC < 1:2969090/76‑1 CTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCC < 1:4999854/76‑1 CTTATTCGCACCTTCCATAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCC < 2:5416662/76‑1 TATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCCTC > 1:2111353/1‑76 TATGCGCACCTTCCTTAAGTAGTTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCCTC < 2:1303395/76‑1 ATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCCTCC < 1:3320439/76‑1 ATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCCTCC > 2:4251993/1‑76 ATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCCTCC > 2:3159555/1‑76 TTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCCTCCG > 1:570077/1‑76 TCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCG < 2:2462934/62‑1 CACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCCTCCGTTGT < 1:5128544/76‑1 CACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCCTCCGTTGT < 1:2582674/76‑1 CACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCCTCCGTTGT > 1:1412859/1‑76 CACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCCTCCGTTGT < 1:5178943/76‑1 CACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCCTCCGATGT > 1:5446116/1‑76 CTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAACATCGCAGCCCCCCTCCGTTGTATG < 2:3155127/76‑1 CTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCCTCCGTTGTATG > 2:2426939/1‑76 CTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCCTCCGTTGTATG > 2:1961083/1‑76 TTCCGTAAGGAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCCTCCGGTGTATGT > 1:2879409/1‑76 TCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCCTCCGTTGTATGTG < 2:375779/76‑1 CCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCCTCCGTTGTATGTGg > 2:1236897/1‑75 CCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCCTCCGTTGTATGTGC > 1:578422/1‑76 AAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1395188‑1395262‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCCTCCGTTGTATGTGC < NC_000913/1976518‑1976445 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |