| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1395262 | NA (NA) | 109 (0.690) | 71/150 | 1.0 | 100% | intergenic (+146/‑127) | trs54/ynaJ | IS5 transposase/hypothetical protein |
| ? | NC_000913 | = 1976518 | 0 (0.000) | intergenic (‑297/+24) | b1892/insB5 | FlhD/IS1 protein InsB | |||||
Only 100 of 110 total aligned reads displayed.
ACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGC > NC_000913/1976443‑1976593 | acGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaa > 1:2990972/1‑76 (MQ=255) gCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAgg > 1:578422‑M2/1‑74 (MQ=255) ccacatACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAgg > 2:1236897‑M2/2‑74 (MQ=255) cacaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAgga < 2:375779‑M2/76‑4 (MQ=255) acaTACACCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTCCTTACggaa > 1:2879409‑M2/1‑72 (MQ=255) caTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaag > 2:2426939‑M2/1‑71 (MQ=255) caTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaag > 2:1961083‑M2/1‑71 (MQ=255) caTACAACGGAGGGGGGCTGCGATGTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaag < 2:3155127‑M2/76‑6 (MQ=255) aTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaagg < 2:5009680‑M2/76‑7 (MQ=255) aCATCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtg > 1:5446116‑M2/1‑68 (MQ=255) aCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtg < 1:2582674‑M2/76‑9 (MQ=255) aCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtg < 1:5178943‑M2/76‑9 (MQ=255) aCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtg > 1:1412859‑M2/1‑68 (MQ=255) aCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcga < 1:4195022‑M2/76‑12 (MQ=255) cGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaa > 1:570077‑M2/1‑64 (MQ=255) ggAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaat < 1:3320439‑M2/76‑14 (MQ=255) ggAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaat > 2:3159555‑M2/1‑63 (MQ=255) gAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaata > 1:2111353‑M2/1‑62 (MQ=255) gAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAACTACTTAAggaaggtgcgcata < 2:1303395‑M2/76‑15 (MQ=255) ggggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTATggaaggtgcgaataag < 2:5416662‑M2/76‑17 (MQ=255) ggggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataag < 1:4999854‑M2/76‑17 (MQ=255) gggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagc < 1:2969090‑M2/76‑18 (MQ=255) gggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagc < 1:5523923‑M2/76‑18 (MQ=255) ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcg > 2:664113‑M2/1‑58 (MQ=255) gggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcgg > 1:1414223‑M2/1‑57 (MQ=255) ggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggg > 2:729784‑M2/1‑56 (MQ=255) gCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcgggg > 1:4508884‑M2/1‑55 (MQ=255) cTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcgggga > 1:2889010‑M2/1‑54 (MQ=255) tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaa < 2:154655‑M2/76‑24 (MQ=255) cGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaat > 2:2411052‑M2/1‑51 (MQ=255) cGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcga < 2:2462934‑M2/62‑12 (MQ=255) cGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcga > 1:2462934‑M2/1‑51 (MQ=255) ttttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattct > 1:2790904‑M2/1‑48 (MQ=255) ttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttc < 2:3339877‑M2/76‑31 (MQ=255) tCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttct > 2:4999853‑M2/1‑45 (MQ=255) cAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctc > 1:5808570‑M2/1‑44 (MQ=255) cAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctc > 1:2219491‑M2/1‑44 (MQ=255) aataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcg > 1:2778702‑M2/1‑43 (MQ=255) aataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcg < 2:4822776‑M2/76‑34 (MQ=255) ataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcgg < 1:1569037‑M2/76‑35 (MQ=255) aatGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggct > 2:2219442‑M2/1‑40 (MQ=255) tGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctga > 2:4975650‑M2/1‑38 (MQ=255) tGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctga < 1:4278765‑M2/76‑39 (MQ=255) cGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgact > 1:2046367‑M2/1‑36 (MQ=255) cGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgact > 1:5523292‑M2/1‑36 (MQ=255) tGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactca < 2:5397196‑M2/76‑43 (MQ=255) gATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcag < 1:2692864‑M2/76‑44 (MQ=255) aTGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagt < 1:5748079‑M2/76‑45 (MQ=255) aTGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagt > 1:2804722‑M2/1‑32 (MQ=255) tGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtc > 2:4442469‑M2/1‑31 (MQ=255) gCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtca > 2:5497551‑M2/1‑30 (MQ=255) cAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcat > 2:5399015‑M2/1‑29 (MQ=255) aGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatt < 2:4283832‑M2/76‑49 (MQ=255) gATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcattt > 2:5360735‑M2/1‑27 (MQ=255) gATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcattt > 1:2510578‑M2/1‑27 (MQ=255) aTCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttc > 2:4123718‑M2/1‑26 (MQ=255) aTCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttc < 1:1312025‑M2/76‑51 (MQ=255) tCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttca < 1:5770031‑M2/76‑52 (MQ=255) cacacaAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcat > 2:526016‑M2/1‑24 (MQ=255) acacaAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatt > 2:2814145‑M2/1‑23 (MQ=255) acacaAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatt < 1:3273172‑M2/76‑54 (MQ=255) cacaAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcattt > 1:3216872‑M2/1‑22 (MQ=255) acaAAGCACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttc > 2:25556‑M2/1‑21 (MQ=255) caAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttct < 2:1090649‑M2/76‑57 (MQ=255) caAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttct < 1:3530581‑M2/76‑57 (MQ=255) aaaaCACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttctt < 1:2696413‑M2/76‑58 (MQ=255) aaaaCACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttctt > 1:3106573‑M2/1‑19 (MQ=255) aaaaCACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttctt < 2:3014048‑M2/76‑58 (MQ=255) aaaCACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttc > 1:179780‑M2/1‑18 (MQ=255) aaaCACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttc < 2:1543494‑M2/76‑59 (MQ=255) aaCGCTCAAGTACTGAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttca > 2:454343‑M2/1‑17 (MQ=255) acacTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcat > 2:919871‑M2/1‑16 (MQ=255) cacTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatg < 1:2600292‑M2/76‑62 (MQ=255) cacTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatg > 2:1140007‑M2/1‑15 (MQ=255) cacTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatg > 1:3240657‑M2/1‑15 (MQ=255) cacTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatg < 1:638071‑M2/76‑62 (MQ=255) acTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgt < 2:1901745‑M2/76‑63 (MQ=255) cTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtt > 2:1377732‑M2/1‑13 (MQ=255) cTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtt < 2:4918115‑M2/76‑64 (MQ=255) cAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttg < 1:4402965‑M2/76‑66 (MQ=255) cAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttg < 2:4703234‑M2/76‑66 (MQ=255) tACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagcc < 1:213826‑M2/76‑70 (MQ=255) aCTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccg < 2:4091459‑M2/76‑71 (MQ=255) cTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccga > 2:4195021‑M2/1‑5 (MQ=255) cTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttcagccga < 1:1233257‑M2/76‑72 (MQ=255) ttAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgat < 1:36077‑M2/76‑73 (MQ=255) tAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatt > 1:2748371‑M2/1‑3 (MQ=255) tAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatt < 2:4639095‑M2/76‑74 (MQ=255) tAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatt < 1:3574783‑M2/76‑74 (MQ=255) aaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattt < 2:2511548‑M2/76‑75 (MQ=255) aaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattt > 2:217704‑M2/1‑2 (MQ=255) aggaaggtgcgaataaggggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttt > 2:5137082‑M2/1‑1 (MQ=255) aggaaggtgcgaataagcggggaaattcttctcggctgacttagtcatttcatttcttcatgtttgagccgatttt > 2:3048865‑M2/1‑1 (MQ=255) aggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttt < 1:17886‑M2/76‑76 (MQ=255) aggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttt > 2:2228810‑M2/1‑1 (MQ=255) aggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttt > 1:3510706‑M2/1‑1 (MQ=255) aggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttt > 2:2114098‑M2/1‑1 (MQ=255) aggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttt > 2:4024465‑M2/1‑1 (MQ=255) aggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttt < 2:2816010‑M2/76‑76 (MQ=255) aggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttt > 1:4661409‑M2/1‑1 (MQ=255) | ACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGC > NC_000913/1976443‑1976593 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |