| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2622492 = | 87 (0.550) | 3 (0.020) | 3/126 | 14.6 | 3.9% | coding (1429/2067 nt) | ppk | polyphosphate kinase |
| ? | NC_000913 | 2622504 = | 75 (0.560) | coding (1441/2067 nt) | ppk | polyphosphate kinase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TATGCACACATCGGGACCGGGAACTTTAACGAAAAA‑ACCGCGCGTCTTTATACTGACTATTCGTTG‑CTGACCGCCGATGCGCGCATCACCAACGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGA > NC_000913/2622417‑2622565 | tATGCACACATCGGGACCGGGAACTTTAACGAAAAA‑ACCGCGCGTCTTTATACTGACTATTCGTTG‑CTGAccgccg > 1:1043949/1‑76 (MQ=255)tATGCACACATCGGGACCGGGAACTTTAACGAAAAA‑ACCGCGCGTCTTTATACTGACTATTCGTTG‑CTGAccgccg > 1:5087618/1‑76 (MQ=255)tATGCACACATCGGGACCGGGAACTTTAACGAAAAA‑ACCGCGCGTCTTTATACTGACTATTCGTTG‑CTGAccgccg > 1:5140414/1‑76 (MQ=255) atccacgcaTCGGGCCCGGGAACTTTAACAAAAAC‑CCCGCGCGTCTTTATACTGACTATTCGTTG‑CTGACCGCCGa < 1:1944473/73‑1 (MQ=255) aTGCACACATCGGGACCGGGAACTTTAACGAAAAA‑ACCGCGCGTCTTTATACTGACTATTCGTTG‑CTGACCGCCGa < 1:98813/76‑1 (MQ=255) gCACACATCGGGACCGGGAACTTTAACGAAAAA‑ACCGCGCGTCTTTATACTGACTATTCGTTG‑CTGACCGCCGATg > 1:1633023/1‑76 (MQ=255) gCACACATCGGGACCGGGAACTTTAACGAAAAA‑ACCGCGCGTCTTTATACTGACTATTCGTTG‑CTGACCGCCGATg > 1:1662492/1‑76 (MQ=255) gCACACATCGGGACCGGGAACTTTAACGAAAAA‑ACCGCGCGTCTTTATACTGACTATTCGTTG‑CTGACCCCCGATg > 2:1832108/1‑76 (MQ=255) aTCGGGACCGGGAACTTTAACGAAAAA‑ACCGCGCGTCTTTATACTGACTATTCGTTG‑CTGACCGCCGATGCGCGCa > 2:4547934/1‑76 (MQ=255) gggACCGGGAACTTTAACGAAAAA‑ACCGCGCGTCTTTATACTGACTATTCGTTG‑CTGACCGCCGCTGCGCGCaccc > 2:4310409/1‑73 (MQ=255) ggACGGGGAACTTAAACAAAAAA‑CCCGCGCGTCTTTATACTGACTATTCGTTG‑CTGACCGCCGATGCGCGCATCAc < 2:4436048/76‑1 (MQ=255) ggccGGGGATTTTAAAAAAAAACCCCGCGCGTTTTTATACTAACTATTCGTTG‑CTGACCGCCGATGCGCGCATCAc < 1:2322439/74‑1 (MQ=255) gACCGGGAACTTTAACGAAAAA‑ACCGCGCGTCTTTATACTGACTATTCGTTG‑CTGTCCGCCCCACCGCGCATcccc > 1:1570775/1‑76 (MQ=255) gACCGGGAACTTTAACGAAAAA‑ACCGCGCGTCTTTATACTGACTATTCGTTG‑CTGACCGCCGATGCGCGCATCAcc > 1:654267/1‑76 (MQ=255) gACCGGGAACTTTAACGAAAAA‑ACCGCGCGTCTTTATACTGACTATTCGTTG‑CTGACCGCCCATGCGCGCCTCAcc > 2:3218302/1‑76 (MQ=255) aCCGGGAACTTTAACGAAAAA‑ACCGCGCGTCTTTATACTGACTATTCGTTG‑CTGACCGCCGATGCGCGCATCACCa > 1:3849562/1‑76 (MQ=255) ccGGGAACTTTAACGAAAAA‑ACCGCGCGTCTTTATACTGACTATTCGTTG‑CTGACCGCCGATGCGCGCATCACCac > 2:2653607/1‑75 (MQ=255) ccGGGAACTTTAACGAAAAA‑ACCGCGCGTCTTTATACTGACTATTCGTTG‑CTGACCGCCGATGCGCGCATCACCaa > 1:3188187/1‑76 (MQ=255) cGGGACTTTTAGCGAAAAC‑CCCGTGTGTTTTAATCCAGATTCTGCGGTG‑CGGACCGCCGATGCGCGCATCACCAAc < 1:2266405/76‑1 (MQ=255) cGGGAACTTTAACGAAAAA‑ACCGCGCGTCTTTATACTGACTATTCGTTG‑CTGACCGCCGCTGCGCGCATCACCCAc > 2:507628/1‑76 (MQ=255) cGGGAACTTTAACGAAAAA‑ACCGCGCGTCTTTATACTGACTATTCGTTG‑CTGACCGCCGATGCGCGCATCACCAAc > 1:3297613/1‑76 (MQ=255) gggAACTTTAACGAAAAA‑ACCGCGCGTCTTTATACTGACTATTCGTTG‑CTGACCGCCGATGCGCGCATCACCAACg > 1:1859721/1‑76 (MQ=255) gggAACTTTAACGAAAAA‑ACCGCGCGTCTTTATACTGACTATTCGTTG‑CTGACCGCCGATGCGCGCATCACCAACg > 1:5637124/1‑76 (MQ=255) ggAACTTTAACGAAAAA‑ACCGCGCGTCTTTATACTGACTATTCGTTG‑CTGACCGCCGATGCGCGCATCACCAACGa > 2:2208869/1‑76 (MQ=255) aagtttAACGAAAAA‑CCCGCGCGTCTTTATACTGACTTTTCGTTG‑CTGCCCGCCGATGCGCGCATCACCAACGAAg < 2:1980187/73‑1 (MQ=255) cTTTAACGAAAAA‑ACCGCGCGTCTTTATACTGACTATTCGTTG‑CTGACCGCCGa > 2:3234394/1‑54 (MQ=255) cTTTAACGAAAAA‑ACCGCGCGTCTTTATACTGACTATTCGTTG‑CTGACCGCCGa < 1:3234394/54‑1 (MQ=255) tttAACGAAAAA‑ACCGCGCGTCTTTATACTGACTATTCGTTG‑CTGACCGCCGATGCGCGCATCACCAACGAAGTAc > 1:1162383/1‑76 (MQ=255) tttAAAAAAAAA‑CCCGCGCGTTTTTATACGGACTATTCGTTG‑CTGCCCGCCGATGCGCGCATCACCAACGAAGTAc < 2:2509046/76‑1 (MQ=255) ttAACGAAAAA‑ACCGCGCGTCTTTATACTGACTATTCGTTG‑CTGACCGCCGATGCGCGCATCACCAACGAAGTAcg > 2:4412264/1‑76 (MQ=255) aaCGAAAAA‑ACCGCGCGTCTTTATACTGCCTATTCGTTG‑CTGACCGCCGCTGCCCCCCTCCCCACCGCAGTCcgcg > 2:160585/1‑74 (MQ=255) aaCGAAAAA‑ACCGCGCGTCTTTATACTGACTATTCGTTG‑CTGACCGCCGATGCGCGCATCACCAACGAAGTAcggc > 1:85585/1‑76 (MQ=255) aaCAAAAAA‑ACCGCGCGTCTTTATACTGACTATTCGTTG‑CTGACCGCCGATGCGCGCATCACCAACGAAGTAcggc < 2:717099/76‑1 (MQ=255) caaaaaa‑cCCGCGCGTTTTTATACTGACTATTCGTTG‑CGGACCGCCGATGCGCGCATCACCAACGAAGTAcggcgg < 2:4690025/74‑1 (MQ=255) cGAAAAA‑ACCGCGCGTCTTTATACTGACTATTCGTTG‑CTGACCGCCGATGCGCGCCTCACCACAGAAGCAcggcgg > 2:1561309/1‑76 (MQ=255) aaaaaaa‑cCCGCGCGTCTTTATACGGACTTTGCGTTG‑CTGCCCGCCGATGCGCGCATCACCAACGAAGTAcggcgg < 2:951700/74‑1 (MQ=255) aaaaaa‑cCCGCGCGTCTTTATACTGACTATTCGTTG‑CTGACCGCCGATGCGCGCATCACCAACGAAGTACGGCggg < 1:3644588/75‑1 (MQ=255) aaaaa‑aCCGCGCGTCTTTATACTGACTATTCGTTG‑CTGACCGCCGATGCGCGCATCACCAACGAAGTACGGCggga > 1:151936/1‑75 (MQ=255) aaaaa‑aCCGAGCGTCTTTATACTGACTATTCGTGG‑CTGAACGCCGATGGGCGCATCACCAACGAAACAcggcggca > 1:203250/1‑74 (MQ=255) aaa‑cCCGCGCGTGTTTTTACGGATTTTTCGTTG‑CTGCCCGCCGATGCGCGCATCACCAACGAAGTACGGCGGGTAt < 2:3269324/76‑1 (MQ=255) aaa‑aCCGCGCGTCTTTATACTGACTATTCGTTG‑CTGACCGCCGATGCGCGCATCACCAACGAAGTACGGCGGGGAt > 1:2875673/1‑76 (MQ=255) aCCGCGCGTCTTTATACTGACTATTCGTTG‑CTGACCGCCGATGCGCGCATCACCAACGAAGTACGGCGGGGATTTa > 2:4256284/1‑76 (MQ=255) ccGCGCTTTTTTATACTGATTTTTCGTTG‑CGGCCCGCCGATGCGCGCATCACCAACGAAGTACGGCGGGTATTTaa < 2:3147093/76‑1 (MQ=255) cgcgctTTTTTATCCTGTTTATTCGTTG‑CTGCCCGCCGATGCGCGCATCACCAACGAAGTACGGCGGGTATTTAAc < 1:4317917/76‑1 (MQ=255) cgcgcgTTTTTATACTGACTATT‑GTTGTCTGACCGCCGATGCGCGCATCACCAACGAAGTACGGCGGGTATTTAAc < 2:3554582/76‑1 (MQ=255) gcgcgTCTTTATACTGACTATTCGTTG‑CTGACCGCCGATGCGCGCATCACCAACGAAGTACGGCGGGGATTTTACt > 1:5649306/1‑76 (MQ=255) gcgcgTCTTTATACTGACTATTCGTTG‑CTGACCGCCGATGCGCGCATCACCAACGAAGTACGGCGGGGATTTTACt > 2:3704474/1‑76 (MQ=255) gcgcgTCTTTATACTGACTATTCGTTG‑CTGACCGCCGATGCGCGCATCACCAACGAAGTACGGCGGGGATTTTACt > 2:3012401/1‑76 (MQ=255) gcgTCTTTATACTGACTATTCGTTG‑CTGACCGCCGATGCGCGCATCACCAACGAAGTACGGCGGGGATTTTACttt > 1:5234307/1‑76 (MQ=255) cgTCTTTATACTGACTATTCGTTG‑CTGACCGCCGATGCGCGCATCACCAACGAAGTACGGCGGGGATTTTACTTTa > 1:234035/1‑76 (MQ=255) cgTCTTTATACTGACTATTCGTTG‑CTGACCGCCGATGCGCGCATCACCAACGAAGTACGGCGGGGATTTAAAttaa > 1:4165974/1‑74 (MQ=255) tttttATGCTGTCTATTCGTTG‑CTCCCCGCCGATGCGCGCATCACCAACGAAGTACGGCGGGTATTTAACTTTAtt < 2:1570775/74‑1 (MQ=255) tCTTTATACTGACTATTCGTTG‑CTGACCGCCGATGCGCGCATCACCAACGAAGTACGGCGGGGATTTTACtttttt > 2:3709175/1‑76 (MQ=255) cTTTATACTGACTATTCGATG‑CTGACCGCCGATGCGCGCATCACCAACGAAGTACGGCGGGTAATTAACTTTATTg > 1:1120580/1‑76 (MQ=255) tttATACTGACTATTCGTTG‑CTGACCGCCGATGCGCGCATCACCAACGAAGTACGGCGGGGATTTTACTTTTTTGa > 1:393694/1‑76 (MQ=255) tttATACTGACTATTCGTTG‑CTGACCGCCGATGCGCGCATCACCAACGAAGTACGGCGGGGATTTTACTTTTTTGa > 1:4786490/1‑76 (MQ=255) tttATACTGACTATTCGTTG‑CTGACCGCCGATGCGCGCATCACCAACGAAGTACGGCGGGGATTTAACTTTATTGa > 1:5201716/1‑76 (MQ=255) ttATACTGACTATTCGTTG‑CTGACCGCCGATGCGCGCATCACCAACGAAGTACGGCGGGGATTTAACTTTAtttta > 1:608953/1‑73 (MQ=255) tatgCTGCCTTTGCGTTG‑CTGACCGCCGATGCGCGCATCACCAACGAAGTACGGCGGGTATTTAACTTTATTGaaa < 2:4954566/76‑1 (MQ=255) ttaCAGATTATTCTTTC‑CGGCCCGCCGATGCGCGCATCACCAACGAAGTACGGCGGGTATTTAACTTTATTGaaaa < 1:3811333/75‑1 (MQ=255) taCTGACTATTCGTTG‑CTGACCGCCGATGCGCGCATCACCAACGAAGTACGGCGGGGATTTTACTTTTTTTTAAAc > 1:2710389/1‑76 (MQ=255) aCTGACTATGCGTTG‑CTGACCGCCGATGCGCGCATCACCAACGAAGTACGGCGGGTATTTAACTTTATTGAAAAcc < 2:2270110/76‑1 (MQ=255) cTGACTATTCGTTG‑CTGACCGCCGATGCGCGCATCACCAACGAAGTACGGCGGGTATTTAACTTTATTTAAAAccc > 2:5580378/1‑76 (MQ=255) gACTATTCGTTG‑CTGACCGCCGATGCGCGCATCACCAACGAAGTACGGCGGGGATTTAACTTTATTTAAAAcccct > 2:5237155/1‑74 (MQ=255) accTATTCGTTG‑CGGCCCGCCGATGCGCGCATCACCAACGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCAt < 1:4318222/74‑1 (MQ=255) tATTCGTTG‑CTGACCGCCGATGCGCGCATCACCAACGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATAcc > 1:5021858/1‑76 (MQ=255) aTTCGTTG‑CTGCCCGCCGATGCGCGCATCACCAACGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCg < 2:1140621/76‑1 (MQ=255) aTTCGTTG‑CTGACCGCCGATGCGCGCATCACCAACGAAGTACGGCGGGTATTTAACTTTTTTTAAAACCCATAccc > 2:1635658/1‑75 (MQ=255) aTTCGTTG‑CTGACCGCCGATGCGCGCATCACCAACGAAGTACGGCGGGGATTTAACTTTTTTGAAAACCCCTAccc > 2:4616542/1‑75 (MQ=255) aTTCGTTG‑CTGACCGCCGATGCGCGCATCACCAACGAAGTACGGCGGGGATTTAACTTTATTGAAAACCCATAccc > 2:1678991/1‑75 (MQ=255) ttCGTTG‑CTGACCGCCGATGCGCGCATCACCAACGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCgc > 2:3000238/1‑75 (MQ=255) ttCGTGG‑CTGCCCGCCGATGCGCGCATCACCAACGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGt < 2:3668626/76‑1 (MQ=255) tCGTTG‑CTGACCGCCGATGCGCGCATCACCAACGAAGTACGGCGGGTATTTAACTTTTTTTAAAACCCCTACCGTc > 2:5258581/1‑76 (MQ=255) tCGTTG‑CTGACCGCCGATGCGCGCATCACCAACGAAGTACGGCGGGGATTTAAATCTCTTGAAAACCCATACCGTc > 2:3980509/1‑76 (MQ=255) gtgg‑CTGCCCGCCTATGCGCGCATCACCAACGAAGTACGGCGGGTATTTAACTTTATTGAAATCCCATCCCGTCCg < 2:1797394/73‑1 (MQ=255) gTTG‑CTCCCCGCCGATGCGCGCATCACCAACGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCg < 1:4575847/76‑1 (MQ=255) gg‑CTGCCCGCCGATGCGCGCATCACCAACGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCGGt < 2:3749358/75‑1 (MQ=255) g‑CTGACCGCCGATGCGCGCATCACCAACGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCGGTg > 1:3026342/1‑76 (MQ=255) aCCGCCGATGCGCGCATCACCAACGAAGTACGGCGGGGATTTAACTTTATTGAAAACCCATACCGTCCGGTGACAt > 1:3662962/1‑76 (MQ=255) aCCGCCGATGCGCGCATCACCAACGAAGTACGGCGGGGATTTAACTTTATTGAAAACCCACACCCTCCGGTGCCac > 2:468705/1‑75 (MQ=255) aCCGACGATGCGCGCATCACCAACGAAGTACGGCGGGGATTTAACTGTTGTGAAAACACATAACGTCCTGTGTCAt > 1:5191263/1‑76 (MQ=255) ccgccgATGCGCGCATCACCAACGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACAtt < 2:2833620/76‑1 (MQ=255) cgccgATGCGCGCATCACCAACGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACAttt < 1:2334829/76‑1 (MQ=255) gccgATGCGCGCATCACCAACGAAGTACGGCGGGTATTTCACTTTATTGAAAACCCCTACCGTCCGGGGACATTTg > 2:4873498/1‑76 (MQ=255) gccgATGCGCGCATCACCAACGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCCTACCGTCCGGTGACCTTTg > 2:4840467/1‑76 (MQ=255) gccgATGCGCGCATCACCAACGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTg > 1:5193030/1‑76 (MQ=255) ccgATGCGCGCATCACCAACGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGa < 2:3662962/76‑1 (MQ=255) | TATGCACACATCGGGACCGGGAACTTTAACGAAAAA‑ACCGCGCGTCTTTATACTGACTATTCGTTG‑CTGACCGCCGATGCGCGCATCACCAACGAAGTACGGCGGGTATTTAACTTTATTGAAAACCCATACCGTCCGGTGACATTTGA > NC_000913/2622417‑2622565 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 4 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |