| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 261899 = | 444 (2.790) | 4 (0.030) | 4/126 | 13.8 | 1.1% | coding (1173/1254 nt) | proA | gamma‑glutamylphosphate reductase |
| ? | NC_000913 | 261911 = | 365 (2.740) | coding (1185/1254 nt) | proA | gamma‑glutamylphosphate reductase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 373 total aligned reads displayed.
GCGTTTTACCGACGGCGGCCAGTTTGGTCTGGGTGCGGAAGTGGCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCGGCATTGGTGATTACACCATTCGTGCGTAAATAAAA > NC_000913/261836‑261986 | gcgTTTGACCGACGGCGGCCAGTTTGGTCTGGGTGCGGAAGTGGCGGTAAGCACACAAAAACTCCACGCGCGTGGc < 1:1435109/76‑1 (MQ=255) ttttACCGACGGCGGCCAGTTTGGTCTGGGTGCGGAAGTGGCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCa < 1:2947561/76‑1 (MQ=255) tttGCCGACGGCGGCCAGTTTGGGCTGGGTGCGGAAGTGGCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCaa < 2:5013593/76‑1 (MQ=255) ttgccGACGGCGGCCAGTTTGGTCTGGGTGCGGAAGTGGCGCTAAGCACACAAAAACTCCCCGCGCGTGGCCCAAt < 1:3570926/73‑1 (MQ=255) ttACCGACGGCGGCCAGTTTGGTCTGGGTGCGGAAGTGGCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAAt < 1:756593/76‑1 (MQ=255) ttACCGACGGCGGCCAGTTTGGTCTGGGTGCGGAAGTGGCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAAt < 2:3332340/76‑1 (MQ=255) tACCGACGGCGGCCAGTTTGGTCTGGGTGCGGAAGTGGCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATg < 1:820932/76‑1 (MQ=255) ccGGCGGCGGCCAGTTTGGTCTGGGTGCGGAAGTGGCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATggg < 2:3031812/76‑1 (MQ=255) ccGACGGCGGCCAGTTTGGTCTGGGTGCGGAAGTGGCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATggg < 2:4167890/76‑1 (MQ=255) ccGACGGCGGCCAGTTTGGTCGGGGTGCGGAAGTGGCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATggg < 2:2837419/76‑1 (MQ=255) cGACGGCGGCCAGTTTGGTCTGGGTGCGGAAGTGGCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATgggg < 1:5327161/76‑1 (MQ=255) gACGGCGGCCAGTTTGGTCTGGGTGCGGAAGTGGCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGc < 1:2877232/76‑1 (MQ=255) aCGGCGGCCAGTTTGGTCTGGGTGCGGAAGTGGCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCt < 2:1936199/76‑1 (MQ=255) cggcggCCAGTTTGGTCTGGGTGCGGAAGTGGCGGGGAGCACCCAAAAACACCCCCCGCGCGGCGCACAggggggg > 1:3411666/1‑73 (MQ=255) ggcggcCAGTTTGGTCTGGGTGCGGAAGTGGCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTgg < 1:5444460/76‑1 (MQ=255) gcggcCGGTTTGGTCTGGGTGCGGAAGTGGCGGTAATCTCACAAAAACTCCACGCTCGTGGCCCAATGGGGCTGGa < 1:4326402/76‑1 (MQ=255) gggcCAGTTTGGTGTGGGTGCGGAAGTGGCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGaa < 2:1506701/75‑1 (MQ=255) cggcCAGTTTGGTCTGGGTGCGGAAGTGGCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGaa < 1:2473015/76‑1 (MQ=255) cggcCAGTTTGGTCTGGGTGCGGAAGTGGCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGaa < 2:1693930/76‑1 (MQ=255) cggcCAGTTTGGTCTGGGTGCGGAAGTGGCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGaa < 1:1814428/76‑1 (MQ=255) cggcCAGTTTGGGCTGGGTGCGGAAGTGGCGGTAAGCACACAAAAACTGCACGCGCGTGGCCCAATGGGGCTGGaa < 2:584521/76‑1 (MQ=255) ggcCAGTTTGGTCTGGGTGCGGAAGTGGCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAg < 2:1369427/76‑1 (MQ=255) gcgaGTTTGGACTGAGTGCGGAAGTGGCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGc < 1:359516/73‑1 (MQ=255) gcCAGTTTGGTCTGGGTGCGGAAGTGGCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGc < 1:4730029/76‑1 (MQ=255) gcCAGTGTGGTCTGGGTGCGGAAGGGGCGGTAAGCACACAAAAACTCCACGCGCGGGGCCCAATGGGGCTGGAAGc < 2:2493168/76‑1 (MQ=255) aGTTTGGTCTGGGTGCGGAAGTGGCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACt < 1:2118492/76‑1 (MQ=255) aGTTTGGTCTGGGTGCGGAAGTGGCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACt < 1:3841317/76‑1 (MQ=255) gTTTGGTCTGGGTGCGGAAGTGGCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTg < 1:3303546/76‑1 (MQ=255) tttGGTCTGGGTGCGGAAGTGGCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑a < 2:3211813/76‑1 (MQ=255) ggTCTGGGTGCGGAAGTGGCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCa < 1:267883/76‑1 (MQ=255) gTCTGGGTGCGGAAGTGGCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCAc < 1:3201995/76‑1 (MQ=255) tCTGGGTGCGGAAGTGGCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACt < 2:4233891/76‑1 (MQ=255) tGGGGGCGGAAGTGGCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTa < 2:1555102/76‑1 (MQ=255) gggTGCGGAAGTGGCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTAc < 1:3143400/76‑1 (MQ=255) gTGCGGAAGTGGCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACaa < 1:4910194/76‑1 (MQ=255) tGCGGAAGTGGCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAg < 2:3898773/76‑1 (MQ=255) tGCGGAAGTGGCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAg < 2:1326024/76‑1 (MQ=255) gCGGAAGTGGCGGTAAGCACACAAAAACTCCACGCGCGTGGCCAAATGGGGCTGGAAGCACTG‑ACCACTTACAAGt < 2:2659218/76‑1 (MQ=255) gCGGAAGTGGCGGGAAGCACACAAAAAAACCACCCGCGCGGGCCAAAGGGGGTGGGAGGAACG‑AACACCTACaaaa > 1:2149010/1‑74 (MQ=255) ggAAGTGGCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTgg < 1:5563148/76‑1 (MQ=255) ggAAGTGGCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTgg < 2:5409473/76‑1 (MQ=255) ggAAGTGGCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTgg < 2:3795023/76‑1 (MQ=255) gAAGTGGCGGGAAGCACACAAAAACACCCCCCCCGCGGCCCCACGGGGGGGGGAGGACCGAACCACTTACAAgggg > 1:67646/1‑76 (MQ=255) aaGTGGCGGTAAGCACACAAAAACTCCCCCCGCGTGGCCCCATGGGGCTGGGAGCCCCG‑GCCACATTCAAGTGGag > 2:1148214/1‑75 (MQ=255) aaGTGGCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGGAGCACTG‑ACCACTTACAAGTGGAt > 2:4736145/1‑76 (MQ=255) aaGTGGCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGAt < 2:2978660/76‑1 (MQ=255) aaGTGGCGGGAAGCACCCAAAAACCCCACGCGCGGGGCCCAATGGGGCGGGGAGCACTG‑ACCACACACAAggggtg > 2:690549/1‑74 (MQ=255) aggggCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATc < 1:5686587/73‑1 (MQ=255) aGTGGCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATc < 2:901286/76‑1 (MQ=255) gTGGCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCg < 1:1656269/76‑1 (MQ=255) gTGGCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCg < 1:4112616/76‑1 (MQ=255) gTGGCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCg < 2:1610799/76‑1 (MQ=255) tGGCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCgg > 1:5771128/1‑76 (MQ=255) tGGCGGGAAGCACACAAAAACTCCACGCGCGTGGCGCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCgg < 1:2720541/76‑1 (MQ=255) ggCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCGGc < 2:4015476/76‑1 (MQ=255) ggCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCGGc < 1:3035557/76‑1 (MQ=255) ggCGGTAAGCACACAAAAACTCCACGCGCGTGGACCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCGGc > 1:3664416/1‑76 (MQ=255) ggCGGTAAGCACACAAAAACTCCACGCGCGGGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCGGc < 2:346189/76‑1 (MQ=255) gCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCGGCa > 1:371757/1‑76 (MQ=255) gCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCGGCa < 1:5085871/76‑1 (MQ=255) gCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCGGCa > 1:1499876/1‑76 (MQ=255) gggTAAGCACAAAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCGGCAt < 2:2625394/75‑1 (MQ=255) cGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCGGCAt < 2:1765413/76‑1 (MQ=255) ggTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCGGCAtt < 2:5557872/76‑1 (MQ=255) gTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGCTCGGCCTTg > 1:2196169/1‑76 (MQ=255) gTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCGGCATTg > 2:4688632/1‑76 (MQ=255) gTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCGGCATTg > 1:4018901/1‑76 (MQ=255) tAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCGGCATTgg > 1:1332189/1‑76 (MQ=255) aGCACACAAAAGCTCCACGCGCGTGGCCCAATGGGGCTTGAAGCACTG‑ACCACTTACAAGTGGATCGGCATTGGTg < 1:3884338/76‑1 (MQ=255) aGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTg > 2:407454/1‑62 (MQ=255) aGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCGGCATTGGTg < 1:878039/76‑1 (MQ=255) gCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCGGCATTGGTGa < 2:5100616/76‑1 (MQ=255) gCACACAAAAACTCCACGCGCGGGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCGGCATTGGTGa < 2:5244423/76‑1 (MQ=255) acacacaAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCGGCATTGGTGa < 1:101459/75‑1 (MQ=255) cacagaAAAACGCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCGGCATTGGTGAt < 1:2228069/76‑1 (MQ=255) cacacaAAAACTCCACTCTCGTGGCCCAATGCGGCTGGAAGCACTT‑ACCACTTACAAGTGTATCGGCATTGGTGAt < 1:1911322/76‑1 (MQ=255) cacacaAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCGGCATTGGTGAt < 2:1857854/76‑1 (MQ=255) cacacaAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCGGCATTGGTGAt < 1:5132929/76‑1 (MQ=255) cacacaAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCGGCATTGGTGAt < 2:3967104/76‑1 (MQ=255) cacacaAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCGGCATTGGTGAt > 1:2368736/1‑76 (MQ=255) acacaAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCGGCATTGGTGAtt > 1:5292673/1‑76 (MQ=255) acacaAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCGGCATTGGTGAtt > 2:3381263/1‑76 (MQ=255) acaAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCGGCATTGGTGATTac < 1:4240056/76‑1 (MQ=255) caAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACt < 2:3594552/41‑1 (MQ=255) caAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCGGCATTGGTGATTaca > 1:4509165/1‑76 (MQ=255) gacaaCTGCACGCGCGTGGCCGAACAGGGCTGGAAGGACTG‑ACCACTTCCAAGTGGATCGGCATTGGTGATTgcac < 1:1142610/73‑1 (MQ=255) aaaaaCTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCGGCATTGGTGATTacac > 2:3117105/1‑76 (MQ=255) aaaaaCTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCGGCATTGGTGATTacac < 1:4368874/76‑1 (MQ=255) aaaaCTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCGGCATTGGTGATTACAcc < 1:2026337/76‑1 (MQ=255) aaaaCTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCGGCAGTGGTGATTACAcc > 1:253518/1‑76 (MQ=255) aaCTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCGGCATTGGTGATTACACCAt > 1:5233726/1‑76 (MQ=255) aaCTCCACGCGCGGGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCGGCATTGGTGATTACACCAt < 2:741866/76‑1 (MQ=255) tcTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCGGCATTGGTGATTACACCAtt > 2:2096932/2‑76 (MQ=255) aCTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCGGCATTGGTGATTACACCAtt < 2:2732999/76‑1 (MQ=255) aCTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCGGCATTGGTGATTACACCAtt > 1:4997212/1‑76 (MQ=255) cTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCGGCATTGGTGCTTACACCATTc > 2:4448442/1‑76 (MQ=255) cTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCGGCATTGGTGATTACACCATTc < 2:5696004/76‑1 (MQ=255) cTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCGGCATTGGTGATTACACCATTc < 2:3517747/76‑1 (MQ=255) tCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCGGCATTGGTGATTACACCATTCg > 1:4851366/1‑76 (MQ=255) tcgcgcgGGGCGCAATGTGGCTGGAAGCGCTG‑ACCGGTTACAAGTGGATCGTCCTTGGAGATTTCAGCATTCGTGc < 2:4573678/75‑1 (MQ=255) | GCGTTTTACCGACGGCGGCCAGTTTGGTCTGGGTGCGGAAGTGGCGGTAAGCACACAAAAACTCCACGCGCGTGGCCCAATGGGGCTGGAAGCACTG‑ACCACTTACAAGTGGATCGGCATTGGTGATTACACCATTCGTGCGTAAATAAAA > NC_000913/261836‑261986 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |