| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1395262 | NA (NA) | 87 (0.640) | 61/150 | 0.9 | 100% | intergenic (+146/‑127) | trs54/ynaJ | IS5 transposase/hypothetical protein |
| ? | NC_000913 | = 1976518 | 0 (0.000) | intergenic (‑297/+24) | b1892/insB5 | FlhD/IS1 protein InsB | |||||
AAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1395188‑1395262‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCCTCCGTTGTATGTGCG < NC_000913/1976518‑1976444 AAACTCGGCCCAAACATGAAGAACTGACCTGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCGCCTTCCT < 1:2802752/76‑1AAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCT < 1:2059051/76‑1AAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCT < 1:4249312/76‑1AAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCT < 1:2788860/76‑1 AAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTT < 2:2120720/76‑1 AATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTA < 2:2299950/76‑1 agCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAA < 2:4691165/74‑1 ATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAA > 1:102443/1‑76 TCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAG > 2:2297066/1‑76 CGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGT < 1:4098501/76‑1 GGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTA > 1:985011/1‑76 GCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAA < 1:4503255/76‑1 CTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAAT < 1:4850110/76‑1 TCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATT < 2:1913797/76‑1 ACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGT > 1:3510332/1‑76 ACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGT < 1:2877288/76‑1 ACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGT > 2:1127771/1‑76 ATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGT < 1:3009255/76‑1 ATGAACAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGT > 2:174635/1‑76 GAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTT < 2:1646777/76‑1 GAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTT > 2:846266/1‑76 GAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGT > 2:3829394/1‑76 GAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGT > 1:1143409/1‑76 AAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTG > 1:694512/1‑76 AAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTG < 2:4759478/76‑1 AAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTG < 1:535009/76‑1 ATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTG < 1:2502670/76‑1 GAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGAT > 1:1800494/1‑76 AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATC > 1:266387/1‑76 ATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTG > 1:890033/1‑76 ATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTG < 2:3765272/76‑1 ATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTG < 2:428262/76‑1 TGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGC < 1:342659/76‑1 TGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCGTCCCTAAGTAATTGAGTGTTATGTGTGATCTGC > 2:1260755/1‑76 GACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTCAGTGTTTTGTGTGATCTGCA > 2:811347/1‑76 ACTGAGTCAGCCTGTAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCAT < 2:3751508/76‑1 CTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATC < 1:3991287/76‑1 GAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCAC < 2:1676781/76‑1 GAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCAC < 2:461224/76‑1 AGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACG < 1:3977222/76‑1 GTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGC < 2:1880859/76‑1 GTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGC > 1:886983/1‑76 GTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTGCCTTAAGTAAGTGAGGGTTTTGTGTGATCTGCATCACGC < 2:1887266/76‑1 TCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCA > 1:313635/1‑76 CAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCAT > 2:3706034/1‑76 CAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCAT > 1:3775994/1‑76 CAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCAT > 1:2744019/1‑76 CGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATT < 2:441774/76‑1 GAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTG < 1:524280/76‑1 AGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGA < 1:4601301/76‑1 AAGAATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAA > 1:1270636/1‑76 ATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCG < 1:481401/76‑1 ATTTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCG > 2:2606645/1‑76 gTTCCCCGGTTAGGCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATATGCAGCACGCGTTATTGAAAATCGC > 1:2241936/2‑76 TTCCCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCA < 2:3339486/76‑1 TTCCCCGCTGATGCGCACCTTCCGTAAGTAATGGAGTGTTTTGGGTGATCTGCATCACGCATTATTGAAAATCGCA < 2:3343571/76‑1 CCCCGCTTATTCGCGCCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGC < 2:3956470/76‑1 CCCCACTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGC < 2:1237986/76‑1 CCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCC < 2:1268466/76‑1 CCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCC < 2:4147829/76‑1 CCCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCC < 1:2177735/76‑1 CCGCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCC > 1:3340086/1‑76 CGCTTATTCGCGCCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCC < 2:67085/76‑1 GCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCC > 1:1698534/1‑76 GCTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCC < 2:3890749/76‑1 CTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCC > 1:2259680/1‑76 CTTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCC < 2:4417389/76‑1 TTATTCTCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCCT < 1:2297067/76‑1 TTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCCT < 1:615528/76‑1 TTATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCCT > 2:2958873/1‑76 TATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCCTC > 2:1900821/1‑76 TATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCCTC > 1:2833817/1‑76 ATTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCCTCC > 2:3553243/1‑76 TTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCCTCCG > 1:2443576/1‑76 TTCGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCCTCCG > 2:2671411/1‑76 gGCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCCTCCGTT < 2:514632/75‑1 GCACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCCTCCGTTG < 1:3971423/76‑1 CACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCCTCCGTTGT > 2:4257185/1‑76 ACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCCTCCGTTGTA > 1:2006058/1‑76 ACCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCCTCCGTTGTA > 1:4334582/1‑76 CCTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCCTCCGTTGTAT < 1:3706034/76‑1 CTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCCTCCGTTGTATG > 1:2360784/1‑76 CTTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCCTCCGTTGTATG > 1:477032/1‑76 TTCCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCCTCCGTTGTATGT < 1:4792933/76‑1 CCTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCCTCCGTTGTATGTGC < 2:185743/76‑1 CTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCCTCCGTTGTATGTGCG > 1:4317417/1‑76 CTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCCTCCGTTGTATGTGCG < 2:2522908/76‑1 AAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1395188‑1395262‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCCTCCGTTGTATGTGCG < NC_000913/1976518‑1976444 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |