New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 1395262 | NA (NA) | 87 (0.640) | 61/150 | 0.9 | 100% | intergenic (+146/‑127) | trs54/ynaJ | IS5 transposase/hypothetical protein |
? | NC_000913 | = 1976518 | 0 (0.000) | intergenic (‑297/+24) | b1892/insB5 | FlhD/IS1 protein InsB |
ACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGC > NC_000913/1976443‑1976593 | acGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaa > 2:2119651/1‑76 (MQ=255) acGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACCCCATTACCTaa > 2:266387/1‑76 (MQ=255) cGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAg > 1:4317417‑M2/1‑75 (MQ=255) cGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAg < 2:2522908‑M2/76‑2 (MQ=255) gCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAgg < 2:185743‑M2/76‑3 (MQ=255) acaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaa < 1:4792933‑M2/76‑5 (MQ=255) caTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaag > 1:477032‑M2/1‑71 (MQ=255) caTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaag > 1:2360784‑M2/1‑71 (MQ=255) aTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaagg < 1:3706034‑M2/76‑7 (MQ=255) tACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggt > 1:4334582‑M2/1‑69 (MQ=255) tACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggt > 1:2006058‑M2/1‑69 (MQ=255) aCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtg > 2:4257185‑M2/1‑68 (MQ=255) cAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgc < 1:3971423‑M2/76‑10 (MQ=255) aaCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcc < 2:514632‑M2/76‑11 (MQ=255) cGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaa > 1:2443576‑M2/1‑64 (MQ=255) cGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaa > 2:2671411‑M2/1‑64 (MQ=255) ggAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaat > 2:3553243‑M2/1‑63 (MQ=255) gAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaata > 2:1900821‑M2/1‑62 (MQ=255) gAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaata > 1:2833817‑M2/1‑62 (MQ=255) aGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataa > 2:2958873‑M2/1‑61 (MQ=255) aGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataa < 1:615528‑M2/76‑16 (MQ=255) aGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgagaataa < 1:2297067‑M2/76‑16 (MQ=255) ggggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataag < 2:4417389‑M2/76‑17 (MQ=255) ggggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataag > 1:2259680‑M2/1‑60 (MQ=255) gggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagc > 1:1698534‑M2/1‑59 (MQ=255) gggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagc < 2:3890749‑M2/76‑18 (MQ=255) ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggcgcgaataagcg < 2:67085‑M2/76‑19 (MQ=255) gggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcgg > 1:3340086‑M2/1‑57 (MQ=255) ggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggg < 2:1268466‑M2/76‑21 (MQ=255) ggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggg < 2:4147829‑M2/76‑21 (MQ=255) ggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggg < 1:2177735‑M2/76‑21 (MQ=255) gCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagtgggg < 2:1237986‑M2/76‑22 (MQ=255) gCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggcgcgaataagcgggg < 2:3956470‑M2/76‑22 (MQ=255) tGCGATTTTCAATAATGCGTGATGCAGATCACCCAAAACACTCCATTACTTACggaaggtgcgcatcagcggggaa < 2:3343571‑M2/76‑24 (MQ=255) tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaa < 2:3339486‑M2/76‑24 (MQ=255) gCGATTTTCAATAACGCGTGCTGCATATCACACAAAACACTCAATTACTTAAggaaggtgcgcctaaccggggaac > 1:2241936‑M2/1‑52 (MQ=255) cGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaat > 2:2606645‑M2/1‑51 (MQ=255) cGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaat < 1:481401‑M2/76‑26 (MQ=255) tttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattctt > 1:1270636‑M2/1‑47 (MQ=255) tCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttct < 1:4601301‑M2/76‑32 (MQ=255) cAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctc < 1:524280‑M2/76‑33 (MQ=255) aataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcg < 2:441774‑M2/76‑34 (MQ=255) atGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctg > 1:2744019‑M2/1‑39 (MQ=255) atGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctg > 2:3706034‑M2/1‑39 (MQ=255) atGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctg > 1:3775994‑M2/1‑39 (MQ=255) tGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctga > 1:313635‑M2/1‑38 (MQ=255) gCGTGATGCAGATCACACAAAACCCTCACTTACTTAAggcaggtgcgaataagcggggaaattcttctcggctgac < 2:1887266‑M2/76‑40 (MQ=255) gCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgac > 1:886983‑M2/1‑37 (MQ=255) gCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgac < 2:1880859‑M2/76‑40 (MQ=255) cGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgact < 1:3977222‑M2/76‑41 (MQ=255) gTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactc < 2:461224‑M2/76‑42 (MQ=255) gTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactc < 2:1676781‑M2/76‑42 (MQ=255) gATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcag < 1:3991287‑M2/76‑44 (MQ=255) aTGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttacaggctgactcagt < 2:3751508‑M2/76‑45 (MQ=255) tGCAGATCACACAAAACACTGAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtc > 2:811347‑M2/1‑31 (MQ=255) gCAGATCACACATAACACTCAATTACTTAGggacggtgcgaataagcggggaaattcttctcggctgactcagtca > 2:1260755‑M2/1‑30 (MQ=255) gCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtca < 1:342659‑M2/76‑47 (MQ=255) cAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcat < 2:3765272‑M2/76‑48 (MQ=255) cAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcat > 1:890033‑M2/1‑29 (MQ=255) cAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcat < 2:428262‑M2/76‑48 (MQ=255) gATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcattt > 1:266387‑M2/1‑27 (MQ=255) aTCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttc > 1:1800494‑M2/1‑26 (MQ=255) cacacaAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcat < 1:2502670‑M2/76‑53 (MQ=255) cacaAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcattt < 2:4759478‑M2/76‑55 (MQ=255) cacaAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcattt > 1:694512‑M2/1‑22 (MQ=255) cacaAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcattt < 1:535009‑M2/76‑55 (MQ=255) acaAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttc > 2:3829394‑M2/1‑21 (MQ=255) acaAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttc > 1:1143409‑M2/1‑21 (MQ=255) aaaCACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttc > 2:846266‑M2/1‑18 (MQ=255) aaaCACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttc < 2:1646777‑M2/76‑59 (MQ=255) acacTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttgttcat > 2:174635‑M2/1‑16 (MQ=255) acacTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcat < 1:3009255‑M2/76‑61 (MQ=255) acTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgt < 1:2877288‑M2/76‑63 (MQ=255) acTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgt > 2:1127771‑M2/1‑14 (MQ=255) acTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgt > 1:3510332‑M2/1‑14 (MQ=255) aaTTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttga < 2:1913797‑M2/76‑67 (MQ=255) aTTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgag < 1:4850110‑M2/76‑68 (MQ=255) ttACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagc < 1:4503255‑M2/76‑69 (MQ=255) tACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagcc > 1:985011‑M2/1‑7 (MQ=255) aCTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccg < 1:4098501‑M2/76‑71 (MQ=255) cTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccga > 2:2297066‑M2/1‑5 (MQ=255) ttAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgct < 2:4691165‑M2/76‑73 (MQ=255) ttAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgat > 1:102443‑M2/1‑4 (MQ=255) tAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatt < 2:2299950‑M2/76‑74 (MQ=255) aaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattt < 2:2120720‑M2/76‑75 (MQ=255) aggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttt < 1:4249312‑M2/76‑76 (MQ=255) aggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttt < 1:2788860‑M2/76‑76 (MQ=255) aggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttt < 1:2059051‑M2/76‑76 (MQ=255) aggaaggcgcgaataagcggggaaattcttctcggctgactcagtcaggtcagttcttcatgtttgggccgagttt < 1:2802752‑M2/76‑76 (MQ=255) | ACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGC > NC_000913/1976443‑1976593 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |