New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 269765 =NA (NA)121 (0.890) 76/150 0.3 25.6% coding (300/405 nt) yi91a hypothetical protein
?NC_000913 = 370983 351 (2.570)coding (536/882 nt) mhpC 2‑hydroxy‑6‑ketonona‑2,4‑dienedioic acid hydrolase

Only 100 of 287 total aligned reads displayed.

ACAAATTGAAATCCGTGAGCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAAC  >  NC_000913/269690‑269837
                                                                           |                                                                        
aCAAATTGAAATCCGTGAGCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACt                                                                          <  2:4859873/76‑1 (MQ=255)
aCAAATTGAAATCCGTGAGCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACt                                                                          >  1:499843/1‑76 (MQ=255)
  aaaTTGAAATCCGTGAGCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGt                                                                        <  1:944903/76‑1 (MQ=255)
  aaaTTGAAATCCGTGAGCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGt                                                                        >  2:548739/1‑76 (MQ=255)
  aaaTCGAAATCCGTGAGCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGt                                                                        <  1:1037265/76‑1 (MQ=255)
   aaTTGAAATCCGTGAGCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTa                                                                       >  1:4494101/1‑76 (MQ=255)
     tggAAAGCCGGTAGCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTTTAGa                                                                     <  2:1218122/74‑1 (MQ=18)
      tGAAATCCGTGAGCTCAGTAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGAt                                                                    <  2:4384682/76‑1 (MQ=255)
      tGAAATCCGTGAGCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGAt                                                                    <  1:3613489/76‑1 (MQ=255)
       gAAATCCGTGAGCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGAtt                                                                   <  1:4834434/76‑1 (MQ=255)
        aaaTCCGTGAGCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGAtta                                                                  >  1:307354/1‑75 (MQ=255)
        aaaTCCGTGAGCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTc                                                                  >  1:2090457/1‑76 (MQ=255)
        aaaTCCGTGAGCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTc                                                                  >  1:2056278/1‑76 (MQ=255)
         aaTCCGTGAGCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCa                                                                 >  1:56174/1‑76 (MQ=255)
         aaTCCGTGAGCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCa                                                                 <  2:1471508/76‑1 (MQ=255)
         aaTCCGTGAGCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCa                                                                 <  1:2935181/76‑1 (MQ=255)
          aTCCGTGAGCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTaaa                                                                >  2:223209/1‑76 (MQ=255)
          aTCCGTGAGCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCaa                                                                <  2:3714714/76‑1 (MQ=255)
           tCCGTGAGCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAAt                                                               >  1:3231882/1‑76 (MQ=255)
             cGTGAGCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTg                                                             >  1:1067096/1‑76 (MQ=255)
              gTGAGCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTgg                                                            <  2:2955503/76‑1 (MQ=255)
               tGAGCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGt                                                           >  1:1430686/1‑76 (MQ=255)
               tGAGCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGt                                                           >  2:719378/1‑76 (MQ=255)
                gAGCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTc                                                          <  2:1026821/76‑1 (MQ=255)
                  gCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCaa                                                        <  1:3521945/76‑1 (MQ=255)
                    tCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACg                                                      <  2:459115/76‑1 (MQ=255)
                      aGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCa                                                    >  2:2582616/1‑76 (MQ=255)
                      aGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCa                                                    <  2:3332305/76‑1 (MQ=255)
                       ggAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCaa                                                   <  1:4461726/76‑1 (MQ=255)
                       ggAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCaa                                                   <  2:2004072/76‑1 (MQ=255)
                       ggAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCaa                                                   >  2:3222101/1‑76 (MQ=255)
                       ggAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCaa                                                   >  1:3793491/1‑76 (MQ=255)
                       ggAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCaa                                                   <  2:2032090/76‑1 (MQ=255)
                        gAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAAc                                                  <  1:4184736/76‑1 (MQ=255)
                         aaaaaGCTACACCGTATTGAAATGGAAAATGAAATATTAAAAACGGCTACTGTAGATTCAATTGGTCAACGCAACa                                                 <  1:2396072/76‑1 (MQ=255)
                          aaaaGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAg                                                >  2:3612480/1‑76 (MQ=255)
                           aaaGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGt                                               >  1:2832218/1‑76 (MQ=255)
                            aaGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGtt                                              >  2:3198570/1‑76 (MQ=255)
                             aGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTa                                             <  1:3835389/76‑1 (MQ=255)
                             aGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTa                                             >  2:4503487/1‑76 (MQ=255)
                             aGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTa                                             >  1:4740218/1‑76 (MQ=255)
                              gCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTAt                                            >  1:4343815/1‑76 (MQ=255)
                                tACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTAtgt                                          >  1:2300434/1‑76 (MQ=255)
                                tACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTAtgt                                          >  1:3620068/1‑76 (MQ=255)
                                tACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTAtgt                                          <  2:4080585/76‑1 (MQ=255)
                                 aCAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTAtgtg                                         <  2:282746/76‑1 (MQ=255)
                                  cAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGa                                        <  2:1386677/76‑1 (MQ=255)
                                    aCGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGaaa                                      <  2:2158929/76‑1 (MQ=255)
                                     cGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGaaaa                                     <  1:3917441/76‑1 (MQ=255)
                                     cGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGaaaa                                     <  2:1820441/76‑1 (MQ=255)
                                      gTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAAc                                    <  1:1530701/76‑1 (MQ=255)
                                       tATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACa                                   <  2:4667664/76‑1 (MQ=255)
                                        aTTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACAt                                  >  2:4022976/1‑76 (MQ=255)
                                        aTTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACAt                                  >  2:823195/1‑76 (MQ=255)
                                        aTTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACAt                                  >  2:1390090/1‑76 (MQ=255)
                                         ttGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATg                                 <  2:1075875/76‑1 (MQ=255)
                                          tGAAATGGCAAATGAAATATTAAAAAAGGCTACTGTCGATTCAATTGGTCAACGCAACAGTTATGTGAAACTATgg                                >  1:2757191/1‑76 (MQ=18)
                                          tGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATgg                                <  2:117286/76‑1 (MQ=255)
                                          tGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATgg                                <  2:66032/76‑1 (MQ=255)
                                          tGAAATGGAAAATGAAATATTAAAAAAGACTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATgg                                <  2:2712921/76‑1 (MQ=255)
                                           gAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATggg                               <  2:1639393/76‑1 (MQ=255)
                                           gAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATggg                               <  2:1949008/76‑1 (MQ=255)
                                            acaTGTAACATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAGCATgggg                              <  1:1738431/74‑1 (MQ=17)
                                             aaTGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGt                             <  2:3481640/76‑1 (MQ=255)
                                             aaTGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGAGAAAACATGGGGt                             >  1:2337085/1‑76 (MQ=255)
                                              aTGGAAAATGAAATATTAAACAAGCCTACTGTCGATTCAATTGGCCCACGCCATAGTTATGTGATAACATGGGGtt                            >  1:2510481/1‑76 (MQ=21)
                                               tGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTg                           >  1:3364715/1‑76 (MQ=255)
                                               tGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTg                           <  2:2912551/76‑1 (MQ=255)
                                                ggAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGc                          >  2:1122372/1‑76 (MQ=255)
                                                 gAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCg                         <  1:674557/76‑1 (MQ=255)
                                                  aaaaTGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCgg                        >  2:1556841/1‑76 (MQ=255)
                                                     aTGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAgg                     >  2:2748538/1‑76 (MQ=255)
                                                      tGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGt                    <  1:2189464/76‑1 (MQ=255)
                                                       gAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACCTGGGGTTGCGGCGGtt                   >  2:4731269/1‑76 (MQ=255)
                                                       gAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGcggcgggt                   >  2:429848/1‑74 (MQ=255)
                                                        aaaTATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGttt                  >  1:1628727/1‑76 (MQ=255)
                                                        aaaTATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGttt                  <  1:1338132/76‑1 (MQ=255)
                                                         aaTATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGtttt                 <  2:3284979/76‑1 (MQ=255)
                                                          atatTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGttttt                >  1:1861248/1‑76 (MQ=255)
                                                           tatTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGtttttt               <  2:4173508/76‑1 (MQ=39)
                                                           tatTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGtttttt               >  2:4801829/1‑76 (MQ=255)
                                                            atTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTGATGTGAAAACATGGGGCTGCGGAGGTTTTTTg              >  2:3816850/1‑76 (MQ=255)
                                                              tAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGaa            >  2:3690159/1‑76 (MQ=255)
                                                                aaaaaGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATg          >  1:2731562/1‑76 (MQ=255)
                                                                 aaaaTGCTACTGTAGTTTCAATTGGTCAACGCAGCAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATga         <  2:4008369/76‑1 (MQ=11)
                                                                 aaaaGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATga         >  1:2622196/1‑76 (MQ=255)
                                                                  aaaGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTCTTTTGTATgag        >  1:2593006/1‑76 (MQ=255)
                                                                   aaGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATgagc       >  2:3398267/1‑75 (MQ=39)
                                                                   aaGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATgaga       >  1:3024358/1‑76 (MQ=39)
                                                                    aGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGAc      <  1:3745612/76‑1 (MQ=38)
                                                                     ggCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGATGTTTTTTGAATGAGACg     >  1:1411961/1‑76 (MQ=255)
                                                                     ggCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACg     >  1:311960/1‑76 (MQ=35)
                                                                     ggCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACg     <  2:1587032/76‑1 (MQ=35)
                                                                      gCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGa    <  1:2986500/76‑1 (MQ=34)
                                                                      gCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGa    <  2:3927541/76‑1 (MQ=34)
                                                                       cTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGaa   <  1:859151/76‑1 (MQ=32)
                                                                        tACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAAc  >  2:3092445/1‑76 (MQ=31)
                                                                        tACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAAc  <  1:248425/76‑1 (MQ=31)
                                                                        tACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAAc  >  1:4609525/1‑76 (MQ=31)
                                                                        tACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAAc  >  2:3376260/1‑76 (MQ=31)
                                                                           |                                                                        
ACAAATTGAAATCCGTGAGCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAAC  >  NC_000913/269690‑269837

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.