| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3349258 = | 16 (0.120) | 89 (0.650) | 55/150 | 1.3 | 84.8% | coding (1403/2331 nt) | arcB | aerobic respiration sensor‑response protein |
| ? | NC_000913 | = 3349263 | NA (NA) | coding (1398/2331 nt) | arcB | aerobic respiration sensor‑response protein | |||||
CTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATAC‑‑‑‑‑C‑GGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATG > NC_000913/3349188‑3349338 | gctggtaaccgtaatatcgccgcccatatttttcgccagacgacgagaaacggccagaccaataccggtgc‑‑‑‑‑c‑ggtg > 2:2647145‑M1/71‑76 (MQ=255)gctggtaaccgtaatatcgccgcccatatttttcgccagacgacgagaaacggccagaccaataccggtgc‑‑‑‑‑c‑ggtg > 1:4569686‑M1/71‑76 (MQ=255)gctggtaaccgtaatatcgccgcccatatttttcgccagacgacgagaaacggccagaccaataccggtgc‑‑‑‑‑c‑ggtg < 1:3987460‑M1/6‑1 (MQ=255)gctggtaaccgtaatatcgccgcccatatttttcgccagacgacgagaaacggccagaccaataccggtgc‑‑‑‑‑c‑ggtg < 2:1749007‑M1/6‑1 (MQ=255)cTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATAC‑‑‑‑‑C‑GGTg > 1:4712509/1‑76 (MQ=255) tggtaaccgtaatatcgccgcccatatttttcgccagacgacgagaaacggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGc < 1:3718588‑M1/8‑1 (MQ=255) tggtaaccgtaatatcgccgcccatatttttcgccagacgacgagaaacggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGc < 2:4495778‑M1/8‑1 (MQ=255) tggtaaccgtaatatcgccgcccatatttttcgccagacgacgagaaacggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGc < 2:3853727‑M1/8‑1 (MQ=255) tggtaaccgtaatatcgccgcccatatttttcgccagacgacgagaaacggccagaccaataccggtgC‑‑‑‑‑C‑GCTGGc < 1:3563049‑M1/8‑1 (MQ=255) ggtaaccgtaatatcgccgcccatatttttcgccagacgacgagaaacggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCa < 2:225653‑M1/9‑1 (MQ=255) ggtaaccgtaatatcgccgcccatatttttcgccagacgacgagaaacggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCa < 1:1173175‑M1/9‑1 (MQ=255) gtaaccgtaatatcgccgcccatatttttcgccagacgacgagaaacggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCAg > 1:4416728‑M1/67‑76 (MQ=255) taaccgtaatatcgccgcccatatttttcgccagacgacgagaaacggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCAgg < 2:1511776‑M1/11‑1 (MQ=255) taaccgtaatatcgccgcccatatttttcgccagacgacgagaaacggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCAgg < 2:176322‑M1/11‑1 (MQ=255) accgtaatatcgccgcccatatttttcgccagacgacgagaaacggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCAGGtt > 1:4208124‑M1/64‑76 (MQ=255) accgtaatatcgccgcccatatttttcgccagacgacgagaaacggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCAGGtt > 2:3987460‑M1/64‑76 (MQ=255) accgtaatatcgccgcccatatttttcgccagacgacgagaaacggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCAGGtt > 1:1091015‑M1/64‑76 (MQ=255) cgtaatatcgccgcccatatttttcgccagacgacgaggaacggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCAGGTTTa < 2:1783121‑M1/15‑1 (MQ=255) gtaatatcgccgcccatatttttcgccagacgacgagaaacggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCAGGTTTAc > 1:3893371‑M1/61‑76 (MQ=255) gaatatcgccgcccatatttttggccagacgacgagaaacggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCAGGTTTAcc > 2:1853842‑M1/60‑76 (MQ=255) aatatcgccgcccatatttttcgccagacgacgagaaacggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCAGGTTTACCg < 2:2403380‑M1/18‑1 (MQ=255) atatcgccgcccatatttttcgccagacgacgagaaacggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCAGGTTTACCGc > 1:540183‑M1/58‑76 (MQ=255) acccgccgcccatatttttcgccagacgacgagaaacggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCAGGTTTACCGcc > 1:2330572‑M1/57‑76 (MQ=255) atcgccgcccatatttttcgccagacgacgacaaacggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCAGGGTTACCGCCa < 1:2280449‑M1/21‑1 (MQ=255) tcgccgcccatatttttcgccagacgacgagaaacggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCAGGTTTACCGCCAt < 2:2534469‑M1/22‑1 (MQ=255) cgccgcccatatttttcgccagacgacgagaaacggccagaccaataccggtgC‑‑‑‑‑C‑GGGGGCAGGCTCACCGccacg < 2:4461244‑M1/23‑3 (MQ=255) cgcccatatttttcgccagacgacgagaaacggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCAGGTTTACCGCCATGACt < 1:4811331‑M1/26‑1 (MQ=255) gcccatatttttcgcaagacgacgagaaacggccagaccaataccggtgA‑‑‑‑‑C‑GGTGGCAGGTTTACCGCCATGACTg < 2:2157817‑M1/27‑1 (MQ=255) cccatatttttcgccagacgacgagaaacggccagaccaataccggcgC‑‑‑‑‑C‑GGTGGCAGGCTTACCGCCATGACTGt < 2:482415‑M1/28‑1 (MQ=255) ccatatttttcgccagacgacgagaaacggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCAGGTTTACCGCCATGACTGTc < 1:919954‑M1/29‑1 (MQ=255) ccatatttttcgccagacgacgagaaacggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCAGGCTTACCGCCATGCCTgtt < 2:160445‑M1/29‑2 (MQ=255) atatttttcgccagacgacgagaaacggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCAGGTTTACCGCCATGACTGTCtt < 1:4196020‑M1/31‑1 (MQ=255) atatttttcgccagacgacgagaaacggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCAGGGTTACCGCCATGACTGTCtt < 1:3422373‑M1/31‑1 (MQ=255) tatttttcgccagacgacgagaaacggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCAGGTTTACCGCCATGACTGTCttt < 1:656778‑M1/32‑1 (MQ=255) ttttcgccagacgacgagaaacggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCAGGTTTACCGCCATGACTGTCTTTCAc < 2:2579143‑M1/35‑1 (MQ=255) ttttcgccagacgacgagaaacggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCAGGTTTACCGCCATGACTGTCTTTCAc < 2:4400203‑M1/35‑1 (MQ=255) tcgccagacgacgagaaacggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCAGGTTTACCGCAATGACTGTCTTTCACCTg < 2:1487793‑M1/38‑1 (MQ=255) gccagacgacgagaaacggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCAGGTTTACCGCCATGCCTGTCTTTCACCTGGt < 2:755071‑M1/40‑1 (MQ=255) ccaagacgacgaaaaccggccagaccaatcccggtgC‑‑‑‑‑C‑GGGGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGt > 1:3256858‑M1/37‑76 (MQ=255) ccaagacgacgaaaaacgcccagaccaatcccggtgC‑‑‑‑‑G‑GGGGGCAGTTTTACCGCCATGACTGTCTTTCACCTGGt > 1:1662401‑M1/37‑76 (MQ=255) cagacgacgagaaacggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTaa < 1:4420933‑M1/42‑1 (MQ=255) gacgacgagaaacggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATa < 1:211588‑M1/44‑1 (MQ=255) cGCCAGAGGACGAGAAACGCCCAGACCAATCCGGGGGCGGGTGGCGGGTTTCCCGCCATGACTGTCTTTCACCTgg < 2:3975216/76‑1 (MQ=255) cgacgagaaacggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACa < 1:3872049‑M1/46‑1 (MQ=255) cgacgagaaacggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACa < 1:3776919‑M1/46‑1 (MQ=255) gacgagaaacggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAacacac < 2:686133‑M1/47‑2 (MQ=255) gacgagaaacggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACAt < 2:4198920‑M1/47‑1 (MQ=255) gacgagaaacggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACAt < 1:3496846‑M1/47‑1 (MQ=255) gacgagaaacggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACAt < 2:2336438‑M1/47‑1 (MQ=255) acgagaaacggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATg < 1:3177932‑M1/48‑1 (MQ=255) acgagaaacggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATg < 1:744878‑M1/48‑1 (MQ=255) cgagaaacggccagaccaatccgggtgC‑‑‑‑‑G‑GGGGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATgg > 1:1495963‑M1/28‑76 (MQ=255) agaaccgcccagaccaatccgggtgC‑‑‑‑‑G‑GGGGGCGGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCg > 1:3581717‑M1/26‑76 (MQ=255) agaaacggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCg < 2:2320176‑M1/51‑1 (MQ=255) agaaacgcccagaccaatcccggtgC‑‑‑‑‑G‑GGGGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCg > 1:3731267‑M1/26‑76 (MQ=255) gaaacggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGa < 2:1303044‑M1/52‑1 (MQ=255) gaaacggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGGAATACATGGCGa < 1:2725298‑M1/52‑1 (MQ=255) aaacggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGaa < 1:3453703‑M1/53‑1 (MQ=255) aaacggccagacaaatccgggtgC‑‑‑‑‑G‑GGTGGCGGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGaa > 1:3818836‑M1/24‑76 (MQ=255) acggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGaaaa < 2:4663646‑M1/55‑1 (MQ=255) acggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGaaaa < 1:4592955‑M1/55‑1 (MQ=255) ggccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAAtt < 2:497078‑M1/57‑1 (MQ=255) ccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAAtttt < 2:843581‑M1/59‑1 (MQ=255) ccagaccaataccggtgC‑‑‑‑‑C‑GGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAAtttt < 2:3868321‑M1/59‑1 (MQ=255) agaccaataccggtgC‑‑‑‑‑C‑GGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTAt < 2:103748‑M1/61‑1 (MQ=255) accaacccgggtgC‑‑‑‑‑C‑GGGGGCAGGTTTCCCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATcc > 1:1079517‑M1/14‑76 (MQ=255) aataccggtgC‑‑‑‑‑C‑GGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGc < 1:4539207‑M1/66‑1 (MQ=255) ataccggtgC‑‑‑‑‑C‑GGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCt < 2:1971179‑M1/67‑1 (MQ=255) ccccggtgC‑‑‑‑‑G‑GGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTc > 1:2330370‑M1/9‑76 (MQ=255) ccccggtgC‑‑‑‑‑G‑GGGGGCAGTTTCCCCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTc > 1:2475701‑M1/9‑76 (MQ=255) ccccggggC‑‑‑‑‑C‑GGGGGCAGTTTCACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTc > 1:1486261‑M1/9‑76 (MQ=255) cacgggtgC‑‑‑‑‑G‑GGTGGCAGTTTTCCCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTc > 1:3656014‑M1/9‑76 (MQ=255) accggtgC‑‑‑‑‑C‑GGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCa < 1:740411‑M1/69‑1 (MQ=255) accggtgC‑‑‑‑‑C‑GGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCa < 1:71853‑M1/69‑1 (MQ=255) accggtgC‑‑‑‑‑C‑GGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCa < 2:3932617‑M1/69‑1 (MQ=255) cggtgC‑‑‑‑‑G‑GGTGGCGGGTTTCCCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATc > 2:756167‑M1/6‑76 (MQ=255) cggtgC‑‑‑‑‑C‑GGCGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCCCATc < 2:4800844‑M1/71‑1 (MQ=255) ggtgC‑‑‑‑‑C‑GGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGACAATTTTATCAAGCCCATcc < 2:4761386‑M1/72‑1 (MQ=255) ggggC‑‑‑‑‑C‑GGTGGCGGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATcc > 1:634637‑M1/5‑76 (MQ=255) gtgC‑‑‑‑‑G‑GGTGGCAGGTTTCCCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCt > 2:3931452‑M1/4‑76 (MQ=255) gtgC‑‑‑‑‑C‑GGTGGCAGGTTTACCGCCATGACTGTCTTTCCCCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCt < 2:435010‑M1/73‑1 (MQ=255) gtgC‑‑‑‑‑C‑GGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCt < 2:541835‑M1/73‑1 (MQ=255) gtgC‑‑‑‑‑C‑GGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCt < 2:486964‑M1/73‑1 (MQ=255) tgC‑‑‑‑‑C‑GGGGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCGCATCCTg < 2:3354702‑M1/74‑1 (MQ=255) gC‑‑‑‑‑C‑GGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGc < 1:3738467‑M1/75‑1 (MQ=255) gC‑‑‑‑‑C‑GGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGc < 1:2298262‑M1/75‑1 (MQ=255) ggggTGGCAGTTTTCCCGCCATGACTGTCTTTCACCTGGTAATACATGGCTAAAATTTTATCCAGCTCATCCTGCg < 1:1548356/74‑1 (MQ=255) c‑GGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCgg > 2:2261389/1‑76 (MQ=255) c‑GGTGGCAGGTGTACCGCCATGACTGTCTTTCACCTGGTAACACACGGCGAAAATTTCATCCAGCTCATCCTGCgg > 2:1195175/1‑76 (MQ=255) c‑GGGGGCAGGTTTCCCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCgg < 1:3145183/76‑1 (MQ=255) gggTGGCGGGTTTCCCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCgg < 1:3482492/75‑1 (MQ=255) ggTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGa > 1:246272/1‑76 (MQ=255) ggTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGa > 1:3054048/1‑76 (MQ=255) tGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAAt > 1:3469210/1‑76 (MQ=255) ggCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATg > 2:3481670/1‑76 (MQ=255) ggCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATg < 1:4663646/76‑1 (MQ=255) | CTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATAC‑‑‑‑‑C‑GGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATG > NC_000913/3349188‑3349338 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |