New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	= 2304640	16 (0.700)	3 (0.150)	3/92	NT	15.2%	coding (1448/2487 nt)	napA	nitrate reductase, periplasmic, large subunit
	?	W3110S.gb	= 2304649	19 (0.920)					coding (1439/2487 nt)	napA	nitrate reductase, periplasmic, large subunit

GCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/2304584‑2304640 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catgtGTACCAACAACATGCA  <  W3110S.gb/2304649‑2304634                                                                           GCGGATAGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTGTACCAAC          <  1:1268810/65‑1   GGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTGTACCAACAACATGCA  <  1:1262788/71‑1                               CATTGATGTTCGGCCCGGCCTGCATGTGTACCAACAAC       >  1:1496368/1‑38                                                                           GCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/2304584‑2304640 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catgtGTACCAACAACATGCA  <  W3110S.gb/2304649‑2304634

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.