| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2304640 | 16 (0.700) | 3 (0.150) | 3/92 | NT | 15.2% | coding (1448/2487 nt) | napA | nitrate reductase, periplasmic, large subunit |
| ? | W3110S.gb | = 2304649 | 19 (0.920) | coding (1439/2487 nt) | napA | nitrate reductase, periplasmic, large subunit | |||||
CGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGTCCAGTAAACATTCAGTTTGCCGTCTTTCAGCGCACGGTCTTGTGCCACCGCGTGCAGACCGA > W3110S.gb/2304592‑2304718 | cgcCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGTCCAGTa < 1:1704372/71‑1 (MQ=255) cAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGTCCAGTaaa > 1:2073764/1‑70 (MQ=255) cccGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGTCCAGTAAACAt > 1:246729/1‑70 (MQ=255) ggCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGTCCAGTAAACATTCAg > 1:176655/1‑71 (MQ=255) gCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGTCCAGTAAACATTCAGt > 1:1189747/1‑71 (MQ=255) aTACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGTCCAGTAAACATTCAGttt < 1:1156851/71‑1 (MQ=255) aCGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGTCCAGTAAACATTCAGTTTGc > 1:1575234/1‑71 (MQ=255) cGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGTCCAGTaa < 1:1764347/57‑1 (MQ=255) cATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGTCCAGTAAACATTCAGTTTGCCGTCt < 1:619015/68‑1 (MQ=255) aTTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGTCCAGTAAACATTCAGTTTGCCGTCttt > 1:1783679/1‑69 (MQ=255) tGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGTCCAGTAAACATTCAGTTTGCCGTCTTTCAgc > 1:1326454/1‑71 (MQ=255) cccggccTGCATGTTGTTGGTACACATGGTCCAGTAAACATTCAGTTTGCCGTCTTTCAGCGCACGGTCtt < 1:1219208/71‑1 (MQ=255) cccggccTGCATGTTGTTGGTACACATGGTCCAGTAAACATTCAGTTTGCCGTCTTTCAGCGCACGGTCtt < 1:412728/71‑1 (MQ=255) ccggccTGCATGTTGTTGGTACACATGGTCCAGTAAACATTCAGTTTGCCGTCTTTCAGCGCACGGTCTtg > 1:1620251/1‑71 (MQ=255) tGCATGTTGTTGGTACacatgcaggccgggccgaacatcaatgaagagcgtatgccgggctggcgcgatcc < 1:1262788‑M2/71‑56 (MQ=255) tGCATGTTGTTGGTACACATGGTCCAGTAAACATTCAGTTTGCCGTCTTTCAGCGCACGGTCTTGTGCCAc > 1:68704/1‑71 (MQ=255) cATGTTGTTGGTACACATGGTCCAGTAAACATTCAGTTTGCCGTCTTTCAGCGCACGGTCTTGTGCCAc < 1:1332479/69‑1 (MQ=255) gttgttGGTACacatgcaggccgggccgaacatcaatg > 1:1496368‑M2/1‑11 (MQ=255) ttgttgGTACACATGGTCCAGTAAACATTCAGTTTGCCGTCttt > 1:1590109/1‑44 (MQ=255) ttgttgGTACACATGGTCCAGTAAACATTCAGTTTGCCGTCTTTCAGCGCACGGTCTTGTGCCACCGCGTg < 1:1251176/71‑1 (MQ=255) gttgGTACacatgcaggccgggccgaacatcaatgaagagcgtatgccgggctggcgctatccgc < 1:1268810‑M2/65‑58 (MQ=255) gttgGTACACATGGTCCAGTAAACATTCAGTTTGCCGTCTTTCAGCGCACGGTCTTGTGCCACCGCGTg > 1:363296/1‑69 (MQ=255) tACACATGGTCCAGTAAACATTCAGTTTGCCGTCTTTCAGCGCACGGTCTTGTGCCAcc < 1:1338256/59‑1 (MQ=255) acacATGGTCCAGTAAACATTCAGTTTGCCGTCTTTCAGCGCACGGTCTTGTGCCACCGCGTGCAGACCg < 1:640045/70‑1 (MQ=255) cacaTGGTCCAGTAAACATTCAGTTTGCCGTCTTTCAGCGCACGGTCTTGTGCCACCGCGTGCAGACCGa < 1:1639553/70‑1 (MQ=255) cacaTGGTCCAGTAAACATTCAGTTTGCCGTCTTTCAGCGCACGGTCTTGTGCCACCGCGTGCAGACCGa < 1:1577464/70‑1 (MQ=255) cacaTGGTCCAGTAAACATTCAGTTTGCCGTCTTTCAGCGCACGGTCTTGTGCCACCGCGTGCAGACCGa < 1:407785/70‑1 (MQ=255) | CGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGTCCAGTAAACATTCAGTTTGCCGTCTTTCAGCGCACGGTCTTGTGCCACCGCGTGCAGACCGA > W3110S.gb/2304592‑2304718 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |