| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 3748799 = | 1 (0.040) | 24 (1.050) | 21/102 | NT | 96.0% | coding (184/984 nt) | tnaB | tryptophan transporter of low affinity |
| ? | W3110S.gb | 4056222 = | NA (NA) | intergenic (‑564/+15) | yrhB/insB | hypothetical protein/IS1 transposase InsAB' | |||||
CCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/3748855‑3748799‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGC > W3110S.gb/4056222‑4056288 CCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGA > 1:1950494/1‑65CCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGA > 1:837437/1‑65 TTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACT > 1:887401/1‑71 TTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACT > 1:878433/1‑71 TATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTT < 1:1437869/70‑1 ATCCTTATCATTGCCTGGTTTTCAATGCTTCATACCGGGTTTTTGTTATTAGGGT > 1:1786502/1‑55 CATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATG > 1:1830539/1‑51 TTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAG > 1:83894/1‑67 TGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTT > 1:1484602/1‑71 CCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTT < 1:850360/70‑1 CTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTG < 1:199646/59‑1 GTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTT < 1:525487/64‑1 TTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCA < 1:1833219/70‑1 TTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTAT > 1:1504946/1‑65 TTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTAT > 1:1086772/1‑65 AATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAT < 1:1472090/70‑1 AATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGA < 1:191164/51‑1 TGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAAT > 1:1128131/1‑71 TGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTC < 1:1888598/64‑1 GCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATG > 1:948466/1‑71 CATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCC > 1:1049987/1‑70 ATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCG < 1:759548/70‑1 GGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCTATGACTT < 1:963693/71‑1 TTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTG > 1:2012963/1‑71 TTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGC < 1:1564613/71‑1 TTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGC < 1:247658/71‑1 TTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCAT < 1:701909/66‑1 TTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCAT < 1:1457004/66‑1 TAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCAT > 1:1353772/1‑65 GGGTAATGACTCCAACTTCTTGATAGTGTTTTATG < 1:1713507/35‑1 GGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTG < 1:1706250/59‑1 GGGTAATGACTCCAACTTATTGATAGTGTTTTATG < 1:1699094/35‑1 CCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/3748855‑3748799‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGC > W3110S.gb/4056222‑4056288 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |