| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 4292798 = | 25 (1.100) | 3 (0.150) | 3/88 | NT | 13.8% | intergenic (+6/‑39) | nrfA/nrfB | nitrite reductase, formate‑dependent, cytochrome/nitrite reductase, formate‑dependent, penta‑heme cytochrome c |
| ? | W3110S.gb | 4292820 = | 16 (0.810) | intergenic (+28/‑17) | nrfA/nrfB | nitrite reductase, formate‑dependent, cytochrome/nitrite reductase, formate‑dependent, penta‑heme cytochrome c | |||||
AGCACCCCGGCAGTTAATAACGAACGTAATACGCTCATATTCACTCCATTGTGTTTTCCGCCCCTTGCGAGGCGGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/4292874‑4292798‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggaaAACACAATGGAGTGAATATGAGCGTATTACGTTCGTTATTAACTGCCGGGGTGCTGGCGTCGGGCCTG > W3110S.gb/4292820‑4292887 AGCACCCCGGCAGTTAATAACGAACGTAATACGCTCATATTCACTCCATTGTGTTTTCCGCCCCTTGCGAG > 1:367080/1‑71AGCACCCCGGCAGTTAATAACGAACGTAATACGCTCATATTCACTCCATTGTGTTTTCCGCCCCTTGCGAG > 1:978218/1‑71 CCCCGGCAGTTAATAACGAACGTAATACGCTCATATTCACTCCATTGTGTTTTCCGCCCCTTGCGAGGCGG < 1:1648460/71‑1 TTTCCGCCCCTTGCGAGGCGGAAAACACAATGGAGTGAATATGA < 1:2069338/44‑1 TCCGCCCCTTGCGAGGCGGAAAACACAATGGAGTGAATATG > 1:1467903/1‑41 CCGCCCCTTGCGAGGCGGAAAACACAATGGAGTGAATATGAGCGTATTACGTTCGTTA > 1:1580292/1‑58 GGCGGAAAACACAATGGAGTGAATATGAGCGTATTACGTTCGTTATTAACTGCCG < 1:773572/55‑1 GCGGAAAACACAATGGAGTGAATATGAGCGTATTACGTTCGTTATT < 1:1540752/46‑1 GGAAAACACAATGGAGTGAATATGAGCGTATTACGTTCGTTATT < 1:630745/44‑1 GAAAACACAATGGAGTGAATATGAGCGTATTACGTTCGTCATTAACTGCCGGGGTGCTGGCGTCGGGCCTG < 1:1160924/71‑1 AAACACAATGGAGTGAATATGAGCGTATTACGTTCGTTATTAACTGCC > 1:442265/1‑48 AGCACCCCGGCAGTTAATAACGAACGTAATACGCTCATATTCACTCCATTGTGTTTTCCGCCCCTTGCGAGGCGGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/4292874‑4292798‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggaaAACACAATGGAGTGAATATGAGCGTATTACGTTCGTTATTAACTGCCGGGGTGCTGGCGTCGGGCCTG > W3110S.gb/4292820‑4292887 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |