| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 4292798 = | 25 (1.100) | 3 (0.150) | 3/88 | NT | 13.8% | intergenic (+6/‑39) | nrfA/nrfB | nitrite reductase, formate‑dependent, cytochrome/nitrite reductase, formate‑dependent, penta‑heme cytochrome c |
| ? | W3110S.gb | 4292820 = | 16 (0.810) | intergenic (+28/‑17) | nrfA/nrfB | nitrite reductase, formate‑dependent, cytochrome/nitrite reductase, formate‑dependent, penta‑heme cytochrome c | |||||
GGAAGAACAGGCACGTAAAAACGGTCTGTTAAGCCAATAACCCCGTTCCGCCTCGCAAGGGGCGGAAAACACAATGGAGTGAATATGAGCGTATTACGTTCGTTATTAACTGCCGGGGTGCTGGCGTCGGGCCTGTTG > W3110S.gb/4292753‑4292890 | ggAAGAACAGGCACGTAAAAACGGTCTGTTAAGCCAATAACCCCGTTCCGCCTCGCAAGGGGCGGAAAaca < 1:143178/71‑1 (MQ=255) gaagaaCAGGCACGTAAAAACGGTCTGTTAAGCCAATAACCCCGTTCCGCCTCGCAAGGGGCGGAAAacac < 1:263348/71‑1 (MQ=255) cGTAAAAACGGTCTGTTAAGCCAATAACCCCGTTCCGCCTCGCAAGGGGCGGAAAACACAATGGAGTGaa > 1:1572189/1‑70 (MQ=255) cGTAAAAACGGTCTGTTAAGCCAATAACCCCGTTCCGCCTCGCAAGGGGCGGAAAACACAATGGAGTGAat < 1:626826/71‑1 (MQ=255) aaaaCGGTCTGTTAAGCCAATAACCCCGTTCCGCCTCGCAAGGGGCGGAAAACACAATGGAGTGAatat > 1:2047234/1‑69 (MQ=255) aaaaCGGTCTGTTAAGCCAATAACCCCGTTCCGCCTCGCAAGGGGCGGAAAACACAATGGAGTGAatat > 1:2027758/1‑69 (MQ=255) aaaaCGGTCTGTTAAGCCAATAACCCCGTTCCGCCTCGCAAGGGGCGGAAAACACAATGGAGTGAata > 1:865175/1‑68 (MQ=255) aCGGTCTGTTAAGCCAATAACCCCGTTCCGCCTCGCAAGGGGCGGAAAACACAATGGAGTGAATATGAGCg < 1:756384/71‑1 (MQ=255) ggTCTGTTAAGCCAATAACCCCGTTCCGCCTCGCAAGGGGCGGAAAACACAATGGAGTGAATATGAGCGTa < 1:522665/71‑1 (MQ=255) tcatattcactccattgtgttTTCCGCCTCGCAAGGGGCGGaaa < 1:2069338‑M1/23‑1 (MQ=255) tGTTAAGCCAATAACCCCGTTCCGCCTCGCAAGGGGCGGAAAacac < 1:1248144/46‑1 (MQ=255) ttAAGCCAATAACCCCGTTCCGCCTCGCAAGGGGCGGAAAACACAATGGAGTGAATATGAGCGTATTAcgt > 1:1565207/1‑71 (MQ=255) aGCCAATAACCCCGTTCCGCCTCGCAAGGGGCGGAAAACACAATGGAGTGAATATGAGCGTATTAcgttcg < 1:1420889/71‑1 (MQ=255) ccAATAACCCCGTTCCGCCTCGCAAGGGGCGGAAAACACAATGGAGTGAATATGAGCGTATTAcgttcgt > 1:1708093/1‑70 (MQ=255) aaTAACCCCGTTCCGCCTCGCAAGGGGCGGAAAACACAATGGAGTGAATATGAg > 1:1630239/1‑54 (MQ=255) aTAACCCCGTTCCGCCTCGCAAGGGGCGGAAAACACAATGGAGTGAATATGTGCGTATTACGTTCGttatt < 1:480337/71‑1 (MQ=255) aTAACCCCGTTCCGCCTCGCAAGGGGCGGAAAACACAATGGAGTGAATATGAGCGTATTACGTTCGttatt < 1:1566896/71‑1 (MQ=255) aaCCCCGTTCCGCCTCGCAAGGGGCGGAAAACACAATGGAGTGAATATGAGCGTATTACGTTCGTTATTaa > 1:1383427/1‑71 (MQ=255) ccGTTCCGCCTCGCAAGGGGCGGAAAACACAATGGAGTGAATATGAGCGTATTACGTTCGTTATTAACTg > 1:470239/1‑70 (MQ=255) tttccgccccttgcgaggcggaaAACACAATGGAGTGAATATGa < 1:2069338‑M2/21‑1 (MQ=255) tccgccccttgcgaggcggaaAACACAATGGAGTGAATATg > 1:1467903‑M2/22‑41 (MQ=255) ccgccccttgcgaggcggaaAACACAATGGAGTGAATATGAGCGTATTACGTTCGtta > 1:1580292‑M2/21‑58 (MQ=255) CCGCCTCGCAAGGGGCGGAAAACACAATGGAGTGAATATGAGCGTATTACGTTCGTTATTAACTGCCgggg < 1:1648460‑M1/71‑1 (MQ=255) CTCGCAAGGGGCGGAAAACACAATGGAGTGAATATGAGCGTATTACGTTCGTTATTAACTGCCGGGGTGCt > 1:367080‑M1/1‑71 (MQ=255) CTCGCAAGGGGCGGAAAACACAATGGAGTGAATATGAGCGTATTACGTTCGTTATTAACTGCCGGGGTGCt > 1:978218‑M1/1‑71 (MQ=255) tCGCAAGGGGCGGAAAACACAATGGAGTGAATATGAGCGTATTACGTTCGTTATTAACTGcc < 1:1391982/62‑1 (MQ=255) aGGGGCGGAAAACACAATGGAGTGAATATGAGCGTATTACGTTCGTTATTAACTGCCGGGGTGCTGGCGTc > 1:1726295/1‑71 (MQ=255) ggggCGGAAAACACAATGGAGTGAATATGAGCGTATTACGTTCGTTATTAACTGCCGGGGTGCTGGCGTCg > 1:1321158/1‑71 (MQ=255) ggcggaaAACACAATGGAGTGAATATGAGCGTATTACGTTCGTTATTAACTGCCg < 1:773572‑M2/48‑1 (MQ=255) gcggaaAACACAATGGAGTGAATATGAGCGTATTACGTTCGttatt < 1:1540752‑M2/40‑1 (MQ=255) ggaaAACACAATGGAGTGAATATGAGCGTATTACGTTCGttatt < 1:630745‑M2/40‑1 (MQ=255) gaaAACACAATGGAGTGAATATGAGCGTATTACGTTCGTCATTAACTGCCGGGGTGCTGGCGTCGGGCCTg < 1:1160924‑M2/68‑1 (MQ=255) aAACACAATGGAGTGAATATGAGCGTATTACGTTCGTTATTAACTGcc > 1:442265‑M2/2‑48 (MQ=255) aaCACAATGGAGTGAATATGAGCGTATTACGTTCGTTATTAACTGCCGGGGTGCTGGCGTCGGGCCtgttg > 1:234577/1‑71 (MQ=255) aaCACAATGGAGTGAATATGAGCGTATTACGTTCGTTATTAACTGCCGGGGTGCTGGCGTCGGGCCtgttg > 1:596246/1‑71 (MQ=255) aaCACAATGGAGTGAATATGAGCGTATTACGTTCGTTATTAACTGCCGGGGTGCTGGCGTCGGGCCtgtt > 1:219483/1‑70 (MQ=255) | GGAAGAACAGGCACGTAAAAACGGTCTGTTAAGCCAATAACCCCGTTCCGCCTCGCAAGGGGCGGAAAACACAATGGAGTGAATATGAGCGTATTACGTTCGTTATTAACTGCCGGGGTGCTGGCGTCGGGCCTGTTG > W3110S.gb/4292753‑4292890 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |