| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 1286086 | 20 (0.880) | 3 (0.150) | 3/90 | NT | 13.4% | coding (906/1539 nt) | narH | nitrate reductase 1, beta (Fe‑S) subunit |
| ? | W3110S.gb | = 1286104 | 21 (1.040) | coding (924/1539 nt) | narH | nitrate reductase 1, beta (Fe‑S) subunit | |||||
TATTGAACGTGCAGCCAGCACCGAGAACGAGAAAGATCTTTACCAGCGTCAGCTGGACGTGTTCCTCGATCCGAACGATCCGAAAGTCATCGAGCAGGCGATTAAAGACGGTATTCCGCTGAGCGTTATTGAAGCCGCA > W3110S.gb/1286017‑1286155 | tATTGAACGTGCAGCCAGCACCGAGAACGAGAAAGATCTTTACCAGCGTCAGCTGGAGGTGTTCCTcgatc > 1:1764587/1‑71 (MQ=255) ttGAACGTGCAGCCAGCACCGAGAACGAGAAAGATCTTTACCAGCGTCAGCTGGACGTGTTCCTcgatccg < 1:1364881/71‑1 (MQ=255) cGTGCAGCCAGCACCGAGAACGAGAAAGATCTTTACCAGCGTCAGCTGGACGTGTTCCTcgatccgaacg < 1:1300990/70‑1 (MQ=255) agccagcACCGAGAACGAGAAAGATCTTTACCAGCGTCAGCTGGACGTGTTCCTcgatccgaacgatccga < 1:707668/71‑1 (MQ=255) gcACCGAGAACGAGAAAGATCTTTACCAGCGTCAGCTGGACGTGTTCCTCGATCCGAACGATCCGAAAGTc < 1:1551483/71‑1 (MQ=255) aCCGAGAACGAGAAAGATCTTTACCAGCGTCAGCTGGACGTGTTCCTCGATCCGAACGATCCGAAAGTCat < 1:501198‑M2/71‑3 (MQ=255) aCCGAGAACGAGAAAGATCTTTACCAGCGTCAGCTGGACGTGTTCCTCGATCCGAACGATCCGAAAGTCa > 1:817377‑M2/1‑69 (MQ=255) gagaacgagaaAGATCTTTACCAGCGTCAGCTGGACGTGTTCCTCGATCCGAACGATCCGAAAGTCatcga > 1:403448‑M2/1‑66 (MQ=255) gaacgagaaAGATCTTTACCAGCGTCAGCTGGACGTGTTCCTCGATgactttcggatcgttcggatcgagg < 1:1030353‑M1/71‑26 (MQ=255) gaacgagaaAGATCTTTACCAGCGTCAGCTGGACGTGTTCCTCGATCCGAACGATACGaaa > 1:964449/1‑61 (MQ=255) aacgagaaAGATCTTTACCAGCGGCAGCTGGACGTGTTCCTCGATCCGAACGATCCGAAAGTCATCGAGCa < 1:822010/71‑1 (MQ=255) cgagaaAGATCTTTACCAGCGTCAGCTGGACGTGTTCCTCGATCCGAACGATCCGAAAGTCATCGAGCAgg > 1:324558/1‑71 (MQ=255) gaaAGATCTTTACCAGCGTCAGCTGGACGTGTTCCTCGATgactttcggatcgttcggatcgag < 1:1871551‑M1/64‑25 (MQ=255) gaaAGATCTTTACCAGCGTCAGCTGGACGTGTTCCTCGATCCGAACGATCCGAAAGTCATCGAGCAGGCGa < 1:560846/71‑1 (MQ=255) aaaGATCTTTACCAGCGTCAGCTGGACGTGTTCCTCGATCCGAACGATCCGAAAGTCATCGAGCAGGCGAt < 1:222563/71‑1 (MQ=255) aaGATCTTTACCAGCGTCAGCTGGACGTGTTCCTCGATgactttcggatcgttcggatcgagga > 1:318154‑M1/1‑38 (MQ=255) aGATCTTTACCAGCGTCAGCTGGACGTGTTCCTCAATCCGAACGATCCGAAAGTCATCGAGCAGGCGAtt > 1:260264/1‑70 (MQ=255) aTCTTTACCAGCGTCAGCTGGACGTGTTCCTCGATCCGAACGATCCGAAAGTCa < 1:15551‑M2/54‑2 (MQ=255) aTCTTTACCAGCGTCAGCTGGACGTGTTCCTCGATCCGAACGATCCGAAAGTCa < 1:1329926‑M2/54‑2 (MQ=255) tttACCAGCGTCAGCTGGACGTGTTCCTCGATCCGAACGATCCGAAAGTCATCGAGCAgg > 1:1825164/1‑60 (MQ=255) aCCAGAGTCAGCTGGACGTGTTCCTCGATCCGAACGATCCGAAAGTCATCGAGCAGGCGATTAAAGACgg < 1:399184/70‑1 (MQ=255) gCGTCAGCTGGACGTGTTCCTCGATCCGAACGATCCGAAAGTCat < 1:548383‑M2/45‑3 (MQ=255) gCGTCAGCTGGACGTGTTCCTCGATCCGAACGATCCGAAAGTCATCGAGCAGGCGATTAAAGACGGTATTc > 1:1900931/1‑71 (MQ=255) aGCTGGACGTGTTCCTCGATCCGAACGATCCGAAAGTCATCGAGCAGGCGATTAAAGACGGTATTCCGCt < 1:1361681/70‑1 (MQ=255) ggACGTGTTCCTCGATCCGAACGATCCGAAAGTCATCGAGCAGGCGATTAAAGa < 1:1149696/54‑1 (MQ=255) gACGTGTTCCTCGATCCGAACGATCCGAAAGTCATCGAGCAGGCGATTAAAGACGGTATTCCGCTGAGCGt < 1:713644/71‑1 (MQ=255) aCGTGTTCCTCGATCCGAACGATCCGAAAGTCATCGAGCAGGc < 1:1372366/43‑1 (MQ=255) cGTGTTCCTCGATCCGAACGATCCGAAAGTCATCGAGCAGGCGATTAAAGACGGTATTCCGCTGAGCGTTa > 1:2034723/1‑71 (MQ=255) ttCCTCGATCCGAACGATCCGAAAGTCATCGAGCAGGCGATTAAAGACGGTATTCCGCTGAGCGTTATTg < 1:901474/70‑1 (MQ=255) ttCCTCGATCCGAACGATCCGAAAGTCATCGAGCAGGCGATTAAAGACGGTATTCCGCTGAGCGTTATTGa < 1:230203/71‑1 (MQ=255) tCCTCGATCCGAACGATCCGAAAGTCatcgaggaacacgtccagctgacgctggtaaagatctt > 1:318154‑M2/1‑26 (MQ=255) ccTCGATCCGAACGATCCGAAAGTCatcgaggaacacgtccagctgacgctggtaaagatctttctcgttc < 1:1030353‑M2/71‑47 (MQ=255) ccTCGATCCGAACGATCCGAAAGTCATCGAGCAGGCGATTAAAGACGGTa > 1:1187367/1‑50 (MQ=255) cTCGATCCGAACGATCCGAAAGTCatcgaggaacacgtccagctgacgctggtaaagatctttc < 1:1871551‑M2/64‑41 (MQ=255) tCGATgactttcggatcgttcggatcgaggaacacgtccagctgacgctggtaaagatctttctcgttctc > 1:403448‑M1/1‑5 (MQ=255) gatccggacgatccgaaAGTCATCGAGCAGGCGATTAAAGACGGTATTCCGCTGAGCGTTATTGAAGCCg > 1:273441/1‑70 (MQ=255) gatccgaacgatccgaaAGTCATCGAGCAGGCGATTAAAGACGGTATTCCGCTGAGCGTTAtt > 1:307598/1‑63 (MQ=255) atccgaacgatccgaaAGTCATCGAGCAGGCGATTAAAGACGGTATTCCGCTGAGCGTTATTGAAGCCGca > 1:1538508/1‑71 (MQ=255) aTgactttcggatcgttcggatcgaggaacacgtccagctgacgctggtaaagatctttctcgttctcggt < 1:501198‑M1/71‑70 (MQ=255) aTgactttcggatcgttcggatcgaggaacacgtccagctgacgc < 1:548383‑M1/45‑44 (MQ=255) tgactttcggatcgttcggatcgaggaacacgtccagctgacgctggtaaagatctttctcgttctcggt > 1:817377‑M1/1‑1 (MQ=255) tgactttcggatcgttcggatcgaggaacacgtccagctgacgctggtaaagat < 1:15551‑M1/54‑54 (MQ=255) tgactttcggatcgttcggatcgaggaacacgtccagctgacgctggtaaagat < 1:1329926‑M1/54‑54 (MQ=255) | TATTGAACGTGCAGCCAGCACCGAGAACGAGAAAGATCTTTACCAGCGTCAGCTGGACGTGTTCCTCGATCCGAACGATCCGAAAGTCATCGAGCAGGCGATTAAAGACGGTATTCCGCTGAGCGTTATTGAAGCCGCA > W3110S.gb/1286017‑1286155 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |