| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 1324223 = | 14 (0.610) | 4 (0.200) | 3/88 | NT | 27.5% | coding (438/1563 nt) | trpE | component I of anthranilate synthase |
| ? | W3110S.gb | 1324247 = | 9 (0.460) | coding (414/1563 nt) | trpE | component I of anthranilate synthase | |||||
TTTTCCGCTGACAGTTGCGGTAAATCTTCAAATCCCGCCACAAGGTCATAAGAGAACAGGCCGCCGAAGAACATGGCTTCTCGTTCTTCCTTCGGTACATTCAACAGATTCTGCAATAAACGGAAAGCGTCA > W3110S.gb/1324158‑1324289 | gcttatgctccctttcggtttttgacgctttccgtttattgcagaatctgttgaatgtaccgaaggaagaa > 1:1330624‑M1/66‑71 (MQ=255) aCAGTTGCGGTAAATCTTCAAATCCCGCCACAAGGTCATAAGAGAACAGGCCGCCGAAGAACATGGCtt < 1:900310/69‑1 (MQ=255) tttcggtttttgacgctttccgtttattgcagaatctgttgaatgtaccgaagGAAGAACATGGCTTCTCg < 1:209619‑M1/18‑1 (MQ=255) aGTTGCGGTAAATCTTCAAATCCCGCCACAAGGTCATAAGAGAACAGGCCGCCGAAGAACATGGCTTCTCg < 1:2046998/71‑1 (MQ=255) gtttttgacgctttccgtttattgcagaatctgttgaatgtaccgaaggaag > 1:1697788‑M1/49‑52 (MQ=255) ggTAAATCTTCAAATCCCGCCACAAGGTCATAAGAGAACAGGCCGCCGAAGAAc < 1:2010580/54‑1 (MQ=255) aaTCTTCAAATCCCGCCACAAGGTCATAAGAGAACAGGCCGCCGAAGAACATGGCTTCTCGTTcttcctt < 1:1373354/70‑1 (MQ=255) tCTTCAAATCCCGCCACAAGGTCATAAGAGAACAGGCCGCCGAAGAACATGGCTTCTCGTTCTTCCTTCg > 1:1660574/1‑70 (MQ=255) aaaTCCCGCCACAAGGTCATAAGAGAACAGGCCGCCGAAGAACATGGCTTCTCGTTCTTCCTTCGGTACAt < 1:1260228/71‑1 (MQ=255) aaaTCCCGCCACAAGGTCATAAGAGAACAGGCCGCCGAAGAACATGGCTTCTCGTTCTTCCTTCGGTACAt > 1:506298/1‑71 (MQ=255) tccgtttattgcagaatctgttgaatgtaccgaagGAAGAACATGGCTTCTCGTTcttcc < 1:627582‑M1/25‑1 (MQ=255) tccgtttattgcagaatctgttgaatgtaccgaagGAAGAACATGGCTTCTCGTTcttcc < 1:368307‑M1/25‑1 (MQ=255) aaTCCCGCCACAAGGTCATAAGAGAACAGGCCGCCga < 1:2026087/37‑1 (MQ=255) cGCCACAAGGTCATAAGAGAACAGGCCGCCGAAGAACATGGCTTCTCGTTCTTCCTTCGGTACATTCaa > 1:845461/1‑69 (MQ=255) tgttgaatgtaccgaagGAAGAACATGGCTTCTCGttct < 1:1104897‑M1/22‑1 (MQ=255) aaGAGAACAGGCCGCCGAAGAACATGGCTTCTCGTTCTTCCTTCg > 1:821404/1‑45 (MQ=255) aaGAGAACAGGCCGCCGAAGAACATGGCTTCTCGTTCTTCCTTCGGTACAtt < 1:214979/52‑1 (MQ=255) aaGAGAACAGGCCGCCGAAGAACATGGCTTCTCGTTCTTCCTTCGGTACATTCAACAGATTCTGCAATaaa > 1:1544134/1‑71 (MQ=255) aaGAGAACAGGCCGCCGAAGAACATGGCTTCTCGTTCTTCCTTCGGTACATTCAACAGATTCTGCAATaaa > 1:1229086/1‑71 (MQ=255) ggCCGCCGAAGAACATGGCTTCTCGTTCTTCCTTCGGTACATTCAACAGATTCTGCAATAAACGGAAAGCg < 1:821811/71‑1 (MQ=255) gccgccGAAGAACATGGCTTCTCGTTCTTCATTCGGTACATTCAACAGATTc > 1:339608/1‑52 (MQ=255) cgccgAAGAACATGGCTTCTCGTTCTTCCTTCGGTACATTCAACAGATTCTGCAATAAACGGAAAGCGTCa < 1:322936/71‑1 (MQ=255) | TTTTCCGCTGACAGTTGCGGTAAATCTTCAAATCCCGCCACAAGGTCATAAGAGAACAGGCCGCCGAAGAACATGGCTTCTCGTTCTTCCTTCGGTACATTCAACAGATTCTGCAATAAACGGAAAGCGTCA > W3110S.gb/1324158‑1324289 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |