| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 1324223 = | 14 (0.610) | 4 (0.200) | 3/88 | NT | 27.5% | coding (438/1563 nt) | trpE | component I of anthranilate synthase |
| ? | W3110S.gb | 1324247 = | 9 (0.460) | coding (414/1563 nt) | trpE | component I of anthranilate synthase | |||||
AATCTTCAAATCCCGCCACAAGGTCATAAGAGAACAGGCCGCCGAAGAACATGGCTTCTCGTTCTTCCTTCGGTACATTCAACAGATTCTGCAATAAACGGAAAGCGTCAAAAACCGAAAGGGAGCATAAGC > W3110S.gb/1324180‑1324311 | aaTCTTCAAATCCCGCCACAAGGTCATAAGAGAACAGGCCGCCGAAGAACATGGCTTCTCGTTcttcctt < 1:1373354/70‑1 (MQ=255) tCTTCAAATCCCGCCACAAGGTCATAAGAGAACAGGCCGCCGAAGAACATGGCTTCTCGTTCTTCCTTCg > 1:1660574/1‑70 (MQ=255) aaaTCCCGCCACAAGGTCATAAGAGAACAGGCCGCCGAAGAACATGGCTTCTCGTTCTTCCTTCGGTACAt < 1:1260228/71‑1 (MQ=255) aaaTCCCGCCACAAGGTCATAAGAGAACAGGCCGCCGAAGAACATGGCTTCTCGTTCTTCCTTCGGTACAt > 1:506298/1‑71 (MQ=255) tccgtttattgcagaatctgttgaatgtaccgaagGAAGAACATGGCTTCTCGTTcttcc < 1:627582‑M1/25‑1 (MQ=255) tccgtttattgcagaatctgttgaatgtaccgaagGAAGAACATGGCTTCTCGTTcttcc < 1:368307‑M1/25‑1 (MQ=255) cGCCACAAGGTCATAAGAGAACAGGCCGCCGAAGAACATGGCTTCTCGTTCTTCCTTCGGTACATTCaa > 1:845461/1‑69 (MQ=255) aaGAGAACAGGCCGCCGAAGAACATGGCTTCTCGTTCTTCCTTCg > 1:821404/1‑45 (MQ=255) aaGAGAACAGGCCGCCGAAGAACATGGCTTCTCGTTCTTCCTTCGGTACAtt < 1:214979/52‑1 (MQ=255) aaGAGAACAGGCCGCCGAAGAACATGGCTTCTCGTTCTTCCTTCGGTACATTCAACAGATTCTGCAATaaa > 1:1544134/1‑71 (MQ=255) aaGAGAACAGGCCGCCGAAGAACATGGCTTCTCGTTCTTCCTTCGGTACATTCAACAGATTCTGCAATaaa > 1:1229086/1‑71 (MQ=255) ggCCGCCGAAGAACATGGCTTCTCGTTCTTCCTTCGGTACATTCAACAGATTCTGCAATAAACGGAAAGCg < 1:821811/71‑1 (MQ=255) gccgccGAAGAACATGGCTTCTCGTTCTTCATTCGGTACATTCAACAGATTc > 1:339608/1‑52 (MQ=255) cgccgAAGAACATGGCTTCTCGTTCTTCCTTCGGTACATTCAACAGATTCTGCAATAAACGGAAAGCGTCa < 1:322936/71‑1 (MQ=255) ggaagaacgagaagccatgttcttcCTTCGGTACATTCAACAGATTCTGCAATAAACGGa < 1:368307‑M2/35‑1 (MQ=255) ggaagaacgagaagccatgttcttcCTTCGGTACATTCAACAGATTCTGCAATAAACGGa < 1:627582‑M2/35‑1 (MQ=255) agaacgagaagccatgttcttcCTTCGGTACATTCAACa < 1:1104897‑M2/17‑1 (MQ=255) GAACATGGCTTCTCGTTCTTCCTTCGGTACATTCAACAGATTCTGCAATAAACGGAAAGCGTCAAAAAcc < 1:1473995‑M1/70‑1 (MQ=255) AACATGGCTTCTCGTTCTTCCTTCGGTACATTCAACAGATTCTGCAATAAACGGAAAGCGTCAAAAACCg < 1:437362‑M1/70‑1 (MQ=255) cgagaagccatgttcttcCTTCGGTACATTCAACAGATTCTGCAATAAACGGAAAGCGTCAAAAACCGaaa < 1:209619‑M2/53‑1 (MQ=255) tcGTTCTTCCTTCGGTACATTCAACAGATTCTGCAATAAACGGAAAGCGTCAAAAACCGAAAGGGAGCAt > 1:1012101/1‑70 (MQ=255) ttcttcCTTCGGTACATTCAACAGATTCTGCAATAAACGGAAAGCGTCAAAAACCGAAAGGGAGCATAAGc > 1:1330624‑M2/7‑71 (MQ=255) cttcCTTCGGTACATTCAACAGATTCTGCAATAAACGGAAAGCGTCAAAAAc > 1:1697788‑M2/5‑52 (MQ=255) | AATCTTCAAATCCCGCCACAAGGTCATAAGAGAACAGGCCGCCGAAGAACATGGCTTCTCGTTCTTCCTTCGGTACATTCAACAGATTCTGCAATAAACGGAAAGCGTCAAAAACCGAAAGGGAGCATAAGC > W3110S.gb/1324180‑1324311 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |