New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	= 2412225	NA (NA)	31 (1.360)	25/102	NT	93.9%	intergenic (‑55/‑782)	insA/yfbQ	IS1 element protein/predicted aminotransferase
	?	W3110S.gb	= 3748807	2 (0.090)					coding (176/984 nt)	tnaB	tryptophan transporter of low affinity

ACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCG  >  W3110S.gb/2412160‑2412293                                                                  |                                                                     aCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaaa                                                                 <  1:999194/71‑1 (MQ=38) aCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaa                                                                  >  1:1744978/1‑70 (MQ=37) aCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaa                                                                  >  1:1846407/1‑70 (MQ=37)         cACTGGAGCACCTCAAAACCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACt                                                          >  1:580277/1‑70 (MQ=255)               aGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTg                                                   <  1:1461608/71‑1 (MQ=255)                gCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGt                                                  >  1:1782983/1‑71 (MQ=255)                   ccTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaaa                                                                 >  1:618008/1‑53 (MQ=40)                      cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGt                                             >  1:846736/1‑70 (MQ=255)                      cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGt                                             >  1:359657/1‑70 (MQ=255)                      cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGt                                             >  1:1421225/1‑70 (MQ=255)                       aaaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGa                                                            >  1:1237103/1‑54 (MQ=255)                       aaaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTcc                                               >  1:193551/1‑67 (MQ=255)                       aaaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGt                                             <  1:703017/69‑1 (MQ=255)                        aaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTtat                                          <  1:1865309/71‑1 (MQ=255)                          aaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAg                                                               >  1:1053896/1‑48 (MQ=255)                            cacCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTca                                                        <  1:1459657/53‑1 (MQ=255)                                 tcatACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTcc                                               <  1:1934963/57‑1 (MQ=255)                                 tcatACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTg                                  >  1:289778/1‑70 (MQ=255)                                 tcatACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTg                                  <  1:1552328/70‑1 (MQ=255)                                 tcatACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGa                                 <  1:1136836/71‑1 (MQ=255)                                  catACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCAACTCACATTGTTcc                                               <  1:1156178/56‑1 (MQ=255)                                   atACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGaa                                <  1:1552103/70‑1 (MQ=255)                                    tACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAg                               >  1:1260475/1‑70 (MQ=255)                                     acacTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGtt                                            >  1:873085/1‑56 (MQ=255)                                           aaTCAGTAAGTTGGCAGCATCACCAAAAAAGCGACt                                                          <  1:95297/36‑1 (MQ=255)                                           aaTCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATca                        >  1:124804/1‑70 (MQ=255)                                              cAGTAAGTTCGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAAAGACTGaa                                >  1:1576476/1‑59 (MQ=38)                                               aGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACAt                                                     <  1:1349642/37‑1 (MQ=255)                                                  aaGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTta                                           >  1:205837/1‑44 (MQ=255)                                                   aGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAatat                <  1:1872164/70‑1 (MQ=255)                                                         cagcaTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATTTATCtt           <  1:269954/69‑1 (MQ=255)                                                          agcaTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCtt           <  1:1380774/68‑1 (MQ=255)                                                           gcaTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAgg       >  1:1343204/1‑71 (MQ=255)                                                            caTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAg                            <  1:1068578/49‑1 (MQ=255)                                                             aTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGcc                                    <  1:750894/40‑1 (MQ=255)                                                               cACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGa     >  1:1270834/1‑69 (MQ=255)                                                                aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAg                               <  1:1326574/42‑1 (MQ=255)                                                                aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATcaca                      >  1:1035864/1‑51 (MQ=255)                                                                aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCg  >  1:1198434/1‑71 (MQ=255)                                                                aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCg  >  1:2061386/1‑71 (MQ=255)                                                                 ccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCg  >  1:1775058/1‑70 (MQ=255)                                                                  cAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTg                                  <  1:1681762/37‑1 (MQ=255)                                                                  |                                                                     ACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCG  >  W3110S.gb/2412160‑2412293

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.