| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 894129 = | 13 (0.570) | 3 (0.150) | 3/88 | NT | 20.5% | intergenic (+274/‑77) | ybjN/potF | predicted oxidoreductase/putrescine transporter subunit |
| ? | W3110S.gb | 894150 = | 12 (0.610) | intergenic (+295/‑56) | ybjN/potF | predicted oxidoreductase/putrescine transporter subunit | |||||
CGGGAGAAAGTTCTCTTTTCTTACACCGCGCCGATAAAAAATATGCACGTTTATTGCATATCTTTCAGTGTGACAACTTTTGTTCGTTTGTTAACGAACTTTCAGAAGGAAAGAGATATGAC > W3110S.gb/894089‑894210 | cGGGAGAAAGTTCTCTTTTCTTACACCGCGCCGATAAAAAATATGCACGTTTATTGCATATCTTTCAgtgt < 1:131503/71‑1 (MQ=255) taacaaacgaacaaaagttgtcacactgaaagATATGCACGTTTATTGCATATc < 1:736093‑M1/22‑1 (MQ=255) ctctTTTCTTACACCGCGCCGATAAAAAATATGCACGTTTATTGCATATCTTTCAGTGTGACAACTTTTGt > 1:350713/1‑71 (MQ=255) ttttCTTACACCGCGCCGATAAAAAATATGCACGTTTATTGCATATCTTTCAGTGTGACa < 1:93889/60‑1 (MQ=255) tCTTACACCGCGCCGATAAAAAATATGCACGTTTATTGCATATCTTTCAGTGTGACAACTTTTGTTCGttt > 1:1256520/1‑71 (MQ=255) acacCGCGCCGATAAAAAATATGCACGTTTATTGCATATCTTTCAGTGTGACAACTTTTGTTCGTTTGtt < 1:177712/70‑1 (MQ=255) aagttgtcacactgaaaaATATGCACGTTTATTGCATATCt < 1:1899647‑M1/23‑1 (MQ=255) ccGATAAAAAATATGCACGTTTATTGCATATCTTTGAGTGTGACAACTTTTGTTCGTTTGTTAACGa < 1:1049946/67‑1 (MQ=255) aTAAAAAATATGCACGTTTATTGCATATCTTTCAGTGTGACAACTTTTGTTCGTTTGTTAACGAACttt > 1:660077/1‑69 (MQ=255) aTAAAAAATATGCACGTTTATTGCATATCTTTCAGTGTGACAACTTTTGTTCGTTTGTTAACGAACttt > 1:780641/1‑69 (MQ=255) aTAAAAAATATGCACGTTTATTGCATATCTTTCAGTGTGACAACTTTTGTTCGTTTGTTAACGAACTTTCa < 1:397587/71‑1 (MQ=255) aTAAAAAATATGCACGTTTATTGCATATCTTTCAGTGTGACAACTTTTGTTCGTTTGTTAACGAACTTTCa < 1:497596/71‑1 (MQ=255) tAAAAAATATGCACGTTTATTGCATATCTTTCAGTGTGACAACTTTTGTTCGTTTGTTAACGAACTTTCAg < 1:533205/71‑1 (MQ=255) agatatgcaataaacgtgcatatTTTTCAGTGTGACAACtt < 1:1899647‑M2/18‑1 (MQ=255) gatatgcaataaacgtgcatatCTTTCAGTGTGACAACTTTTGTTCGTTTGTTa < 1:736093‑M2/32‑1 (MQ=255) atatgcaataaacgtgcatatCTTTCAGTGTGACAACTTTTGTTCg < 1:595488‑M2/25‑1 (MQ=255) GCACGTTTATTGCATATCTTTCAGTGTGACAACTTTTGTTCGTTTGTTAACg > 1:1954239‑M1/1‑52 (MQ=255) gTTTATTGCATATCTTTCAGTGTGACAACTTTTGTTCGTTTGTTAACGAACTTTCAg < 1:829483/57‑1 (MQ=255) tATTGCATATCTTTCAGTGTGACAACTTTTGTTCGTTTGTTAACGAACTTTCAGAAGGAAAGAGATATGAc > 1:2006733/1‑71 (MQ=255) ttGCATATCTTTCAGTGTGACAACTTTTGTTCGTTTGtt < 1:1475086/39‑1 (MQ=255) ttGCATATCTTTCAGTGTGACAACTTTTGTTCGTTTGtt < 1:1664809/39‑1 (MQ=255) catatCTTTCAGTGTGACAACTTTTGTTCGTTTGTTaa > 1:757387‑M2/6‑38 (MQ=255) atatCTTTCAGTGTGACAACTTTTGTTCGTTTGTTAAc < 1:313334‑M2/34‑1 (MQ=255) | CGGGAGAAAGTTCTCTTTTCTTACACCGCGCCGATAAAAAATATGCACGTTTATTGCATATCTTTCAGTGTGACAACTTTTGTTCGTTTGTTAACGAACTTTCAGAAGGAAAGAGATATGAC > W3110S.gb/894089‑894210 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |