| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 235806 | 92 (1.130) | 9 (0.120) | 6/90 | NT | 9.7% | coding (197/468 nt) | rnhA | ribonuclease HI, degrades RNA of DNA‑RNA hybrids |
| ? | W3110S.gb | = 235822 | 83 (1.110) | coding (181/468 nt) | rnhA | ribonuclease HI, degrades RNA of DNA‑RNA hybrids | |||||
CAGCCACGTTTTTTCCAGTTATGGATCCACTGGGTGATACCCTGGCGGACATACTGGCTGTCGGTACTCAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/235734‑235806‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaGAACATTGCGAAGTCATTTTGAGTACCGACAGCCAGTATGTCCGCCAGGGTATCACCCAGTGGATCCAT < W3110S.gb/235822‑235754 CAGCCACGTTTTTTCCAGTTATGGATCCACTGGGTGATACCCTGGCGGACATACTGGCTGTCGGTACTCAA < 1:3133854/71‑1CAGCCACGTTTTTTCCAGTTATGGATCCACTGGGTGATACCCTGGCGGACATACTGGCTGTCGGTACTCAA < 1:7638969/71‑1 TTATGGATCCACTGGGTGATACCCTGGCGGACATACTGGCTGTCGGTACTCAAAAGAACATTGCGAAGTCA > 1:2332703/1‑71 TATGGATCCACTGGGTGATACCCTGGCGGACATACTGGCTGTCGGTACTCAAAAGAACATTGCGAAGTCAT > 1:262030/1‑71 ATGGATCCACTGGGTGATACCCTGGCGGACATACTGGCTGTCGGTACTCAAA > 1:4128315/1‑52 ATGGATCCACTGGGTGATACACTGGCGGACATACTGGCTGTCGGTACTCAAA > 1:1771083/1‑52 TGGATCCACTGGGTGATACCCTGGCGGACATACTGGCTGTCGGTACTCAA < 1:6961110/50‑1 GATCCACTGGGTGATACCCTGGCGGACATACTGGCTGTCGGTACTCAAAAGAACATTGCGAAGTCATTTTG < 1:3649681/71‑1 GATCCACTGGGTGATACCCTGGCGGACATACTGGCTGTCGGTACTCAAAAGAACATTGCGAAGTCATTTT > 1:1403228/1‑70 CCACTGGGTGATACCCTGGCGGACATACTGGCTGTCGGTACTCA < 1:619270/44‑1 CCACTGGGTGATACCCTGGCGGACATACTGGCTGTCGGTACTCA < 1:5956845/44‑1 CCACTGGGTGATACCCTGGCGGACATACTGGCTGTCGGTACTCA < 1:3819262/44‑1 TGATACCCTGGCGGACATACTGGCTGTCGGTACTCAAAA < 1:5432987/39‑1 TGATACCCTGGCGGACATACTGGCTGTCGGTACTCAAAA < 1:4573579/39‑1 ACCCTGGCGGACATACTGGCTGTCGGTACTCAAAA > 1:1047103/1‑35 CCCTGGCGGACATACTGGCTGTCGGTACTCAAAAGAACATTGCGAAGTCATTTT < 1:6300487/54‑1 CCCTGGCGGACATACTGGCTGTCGGTACTCAAAAGAACATTGCGAAGTCATTTT < 1:4589881/54‑1 CTGGCGGACATACTGGCTGTCGGTACTCAAAAGAACATTGCGAAGTCATTTTGA > 1:4196932/1‑54 CTGGCGGACATACTGGCTGTCGGTACTCAAAAGAACATTGCGAAGTCATTTTGA > 1:1064907/1‑54 CTGGCGGACATACTGGCTGTCGGTACTCAAAAGAACATTGCGAAGTCATTTTGA > 1:3271162/1‑54 AAAAGAACATTGCGAAGTCATTTTGAGTACCGACAGCCATTATGTCCGCCAGGGTATCACCCAGTGGATC > 1:4563286/1‑70 AAAAGAACATTGCGAAGTCATTTTGAGTACCGACAGCCAGTATGTCCGCCAGGG > 1:6428214/1‑54 AAAAGAACATTGCGAAGTCATTTTGAGTACCGACAGCCAGTATGTCCGCCAGGG > 1:5058715/1‑54 AAAAGAACATTGCGAAGTCATTTTGAGTACCGACAGCCAGTATGTCCGCCAGG > 1:103402/1‑53 AAAAGAACATTGCGAAGTCATTTTGAGTACCGACAGCCAGTATGTCC > 1:1472271/1‑47 AAAAGAACATTGCGAAGTCATTTTGAGTACCGACAGCCAGTA > 1:2201667/1‑42 AAAAGAACATTGCGAAGTCATTTTGAGTACCGACAGCCAGTA > 1:4668358/1‑42 AAAAGAACATTGCGAAGTCATTTTGAGTACCGACAGCCAG > 1:5139541/1‑40 AAAAGAACATTGCGAAGTCATTTTGAGTACCGACAG < 1:146804/36‑1 AAAGAACATTGCGAAGTCATTTTGAGTACCGACAGCCAGTATGTCCGCCAGGGTATCACCCAGTGGATCCA < 1:5833916/71‑1 AAAGAACATTGCGAAGTCATTTTGAGTACCGACAGCCAGTATGTCCGCCAGGGTATCACCCAGTGGATCCA < 1:2513503/71‑1 AAAGAACATTGCGAAGTCATTTTGAGTACCGACAGCCAGTATGTCCGCCAGGGTATCACCCAGTGGATCCA > 1:1333663/1‑71 AAAGAACATTGCGAAGTCATTTTGAGTACCGACAGCCAGTATGTCCGCCAGGGTATCACCCAGTGGATCC < 1:3303982/70‑1 AAGAACATTGCGAAGTCATTTTGAGTACCGACAGCCAGTATGTCCGCCAGGGTATCACCCAGTGGATCCAT < 1:7924866/71‑1 AAGAACATTGCGAAGTCATTTTGAGTACCGACAGCCAGTATGTCCGCCAGGGTATCACCCAGTGGATCCAT < 1:7931406/71‑1 AAGAACATTGCGAAGTCATTTTGAGTACCGACAGCCAGTATGTCCGCCAGGGTATCAC > 1:6990700/1‑58 CAGCCACGTTTTTTCCAGTTATGGATCCACTGGGTGATACCCTGGCGGACATACTGGCTGTCGGTACTCAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/235734‑235806‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaGAACATTGCGAAGTCATTTTGAGTACCGACAGCCAGTATGTCCGCCAGGGTATCACCCAGTGGATCCAT < W3110S.gb/235822‑235754 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |