| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 314454 = | NA (NA) | 7 (0.090) | 6/90 | NT | NA | coding (874/888 nt) | eaeH | attaching and effacing protein, pathogenesis factor |
| ? | W3110S.gb | 314485 = | NA (NA) | intergenic (+17/‑21) | eaeH/insE | attaching and effacing protein, pathogenesis factor/IS3 element protein | |||||
Only 100 of 144 total aligned reads displayed.
CTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/314527‑314454‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taagTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAAC > W3110S.gb/314485‑314554 CTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGT < 1:760920/71‑1CTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGT < 1:2410306/71‑1CTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGT < 1:72608/71‑1 TGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGT > 1:459213/1‑70 TGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGT > 1:1551719/1‑70 TGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGT > 1:2140084/1‑70 GTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGT > 1:373601/1‑69 GTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGT > 1:5512311/1‑69 TTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAG < 1:1119962/71‑1 TTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAG < 1:3503533/71‑1 TTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAG < 1:3093039/71‑1 TTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAG < 1:7321353/71‑1 TTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAA < 1:2748057/70‑1 TTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTA < 1:2695888/69‑1 TTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTA < 1:7232517/69‑1 TTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGT > 1:2560813/1‑68 TTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGT > 1:5191960/1‑68 TTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGT > 1:5141522/1‑68 TTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGT > 1:4198195/1‑68 TTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTACACTATTGCTGGGTA < 1:937633/69‑1 TTTTTGTCATGTGAGTCACCTCTCACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGT > 1:6045579/1‑68 TTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAA > 1:1057459/1‑69 TTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTA < 1:6545170/68‑1 TTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGT > 1:5122012/1‑67 TTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGT > 1:1672531/1‑67 TTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGT > 1:6116882/1‑67 TTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGT > 1:7390802/1‑67 TTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAG < 1:599075/69‑1 TTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGT > 1:3487468/1‑66 TTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGT > 1:5101991/1‑66 TGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACCATTGCTGGGTAA < 1:7279115/61‑1 AGTCACCTCTGACTGAGAGTTTACTCGCTTAGCCGCGTGTCCACTATTGCTGGGTAA < 1:1359306/57‑1 AGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAA < 1:6457018/57‑1 ACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTA < 1:4483325/45‑1 ACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTA < 1:3572166/45‑1 CTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAG < 1:6815839/46‑1 AGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAA > 1:4797714/1‑42 GAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAA > 1:115078/1‑41 GAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAA > 1:3945435/1‑41 TCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGTGAGTAAACTCTCAGTCAGAGGTGA < 1:3432058/59‑1 ACTTAGCCGCGTGTCCACTATTGCTGGGTAAGTGAGTAAACTCTCAGTCAGAGGTG < 1:5604964/56‑1 TAGCCGCGTGTCCACTATTGCTGGGTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAA > 1:1813694/1‑69 TCCACTATTGCTGGGTAAGTGAGTAAACTCTCAGTCAGAGGTGAC > 1:5915598/1‑45 TCCACTATTGCTGGGTAAGTGAGTAAACTCTCAGTCAGAGGTGAC > 1:5996859/1‑45 aTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAC < 1:3159455/39‑1 TAAGTGAGTAAACTCTCAGTCAGAGGTGACTCTCATGACAAAAACAGTAT > 1:7870792/1‑50 TAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGT > 1:152861/1‑70 TAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGT < 1:2192731/58‑1 TAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTA < 1:3562405/49‑1 TAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTA < 1:2556743/49‑1 TAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTA < 1:6169617/49‑1 TAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAC < 1:1541478/39‑1 TAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATAACAAA < 1:2240301/42‑1 TAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAT > 1:6556821/1‑36 TAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAT > 1:5667357/1‑36 AAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAAag > 1:6389979/1‑43 AAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTA > 1:2685698/1‑70 AAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTA > 1:4639093/1‑70 AAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTA > 1:4894940/1‑70 AAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACC > 1:4364337/1‑65 AAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACC > 1:4049939/1‑65 AAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAA > 1:6000432/1‑63 AAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAA > 1:16317/1‑59 AAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCA < 1:5669022/51‑1 AAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCA < 1:5143883/51‑1 AAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCA < 1:5445503/51‑1 AAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAG < 1:1954173/46‑1 AAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAA > 1:449217/1‑42 AAGAGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAA > 1:690142/1‑63 AGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAA < 1:4508647/71‑1 AGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAA < 1:1997283/71‑1 AGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAA < 1:6228369/71‑1 AGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAA < 1:7128607/71‑1 AGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAA < 1:7507906/71‑1 AGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTA < 1:6841126/69‑1 AGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTA < 1:5929224/69‑1 AGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTA < 1:872825/69‑1 AGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTA < 1:3962903/69‑1 AGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACC > 1:4736746/1‑64 AGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAA > 1:2129671/1‑51 AGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAA > 1:7261411/1‑51 AGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTAT > 1:4351637/1‑48 AGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTAT > 1:4346450/1‑48 AGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAA < 1:4805622/42‑1 AGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAA > 1:1331757/1‑42 AGTGAGTAAACTCTCAGTCAGAGGTGACCCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAA < 1:2385676/71‑1 GTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAAC < 1:3553005/71‑1 GTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAAC < 1:218581/71‑1 GTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAAC < 1:456519/71‑1 GTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAAC < 1:4441333/71‑1 GTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAAC < 1:3763239/71‑1 GTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAA > 1:4246356/1‑70 GTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAA > 1:3399388/1‑70 GTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAA > 1:3841724/1‑70 GTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAA < 1:968061/70‑1 GTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAA > 1:5260169/1‑60 GTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCA > 1:1862700/1‑53 GTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCA > 1:1251960/1‑53 GTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAC < 1:1283287/36‑1 GTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAC < 1:3673764/36‑1 CTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/314527‑314454‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taagTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAAC > W3110S.gb/314485‑314554 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |