| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 314454 = | NA (NA) | 7 (0.090) | 6/90 | NT | NA | coding (874/888 nt) | eaeH | attaching and effacing protein, pathogenesis factor |
| ? | W3110S.gb | 314485 = | NA (NA) | intergenic (+17/‑21) | eaeH/insE | attaching and effacing protein, pathogenesis factor/IS3 element protein | |||||
Only 100 of 189 total aligned reads displayed.
GTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAA > W3110S.gb/314384‑314521 | gTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCctc > 1:6880267/1‑71 (MQ=255) agatggaaggtataggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCt < 1:1159627‑M1/3‑1 (MQ=255) agatggaaggtataggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCt > 1:3558260‑M1/69‑71 (MQ=255) agatggaaggtataggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCt > 1:536524‑M1/69‑71 (MQ=255) gTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTAcc > 1:7677057/1‑71 (MQ=255) gaaggtataggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTAccc > 1:2342859‑M1/64‑71 (MQ=255) aaGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAg > 1:3000763/1‑71 (MQ=255) gATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGc > 1:6216764/1‑70 (MQ=255) tataggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCaa > 1:6700125‑M1/59‑71 (MQ=255) taggttttaccgtcttcgctgacttcccacttttcagcgagggccgggatcactgaTCTTACCCAGCAATa > 1:5788398‑M1/57‑71 (MQ=255) taggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAAt > 1:1494934‑M1/57‑70 (MQ=255) aggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAg < 1:5552508‑M1/16‑1 (MQ=255) aggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAg < 1:4557755‑M1/16‑1 (MQ=255) aGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATa < 1:408557/70‑1 (MQ=255) gcgcCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGt > 1:7610550/1‑71 (MQ=255) gttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTg > 1:6046557‑M1/54‑71 (MQ=255) gcCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCctc < 1:5886652/54‑1 (MQ=255) gcCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCctc < 1:1351453/54‑1 (MQ=255) gcCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCctc < 1:3573497/54‑1 (MQ=255) gcCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTgg < 1:2431628/71‑1 (MQ=255) gtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGaca < 1:5478721‑M1/22‑1 (MQ=255) aGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGaca > 1:1119298/1‑67 (MQ=255) tcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCtt > 1:215982‑M1/45‑48 (MQ=255) cttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAg > 1:4717429‑M1/44‑59 (MQ=255) ttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGc < 1:960850‑M1/28‑1 (MQ=255) ttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGc < 1:765972‑M1/28‑1 (MQ=255) ccGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCt > 1:2951799/1‑70 (MQ=255) ctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGt > 1:1007154‑M1/39‑71 (MQ=255) cATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGt < 1:6591623/71‑1 (MQ=255) tgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGt < 1:7795135‑M1/33‑1 (MQ=255) gCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAg > 1:1435994/1‑71 (MQ=255) gCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGAAATAGTgg > 1:3077248/1‑54 (MQ=255) cTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGc < 1:7026547/45‑1 (MQ=255) aTTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTaa < 1:1473775/63‑1 (MQ=255) aTTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTaa < 1:4346423/63‑1 (MQ=255) tttCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa > 1:6189989/1‑71 (MQ=255) tCTGCCGAGGTGACCTATACGCCAGTGCCTCTTAcc > 1:742760/1‑36 (MQ=255) tCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATa > 1:5640024/1‑44 (MQ=255) tCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGa > 1:6636951/1‑64 (MQ=255) tCTGCCGAGGTGACATATACGCCAGTGCCTCTTACCCAGCAATa > 1:5289578/1‑44 (MQ=255) cacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAct < 1:6396736‑M1/42‑1 (MQ=255) cttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct < 1:2903641‑M1/44‑1 (MQ=255) cttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAc < 1:2694865‑M1/41‑1 (MQ=255) ttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGt > 1:6104001‑M1/27‑59 (MQ=255) ttcagcgaggcccgggatcactgaTCTTACCCAGCAATAg < 1:1864251‑M1/16‑1 (MQ=255) ttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtca < 1:2579435‑M1/46‑1 (MQ=255) gAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGa > 1:6544487/1‑43 (MQ=255) gAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGt > 1:4166166/1‑56 (MQ=255) cagcgaggcccgggatcactgaTCTTAGCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt < 1:6120855‑M1/48‑1 (MQ=255) aGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATa > 1:2115171/1‑37 (MQ=255) gcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag > 1:5228788‑M1/21‑71 (MQ=255) gTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGac < 1:4456894/41‑1 (MQ=255) gTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGac < 1:2375306/41‑1 (MQ=255) tGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCaga < 1:5678331/71‑1 (MQ=255) cgaggcccgggatcactgaTCTTACCCAGCAATAg < 1:6148177‑M1/16‑1 (MQ=255) cgaggcccgggatcactgaTCTTACCCAGCAATAg < 1:1210763‑M1/16‑1 (MQ=255) gACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCt < 1:5075184/47‑1 (MQ=255) ccTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACCCGCGGCTaa > 1:1044840/1‑47 (MQ=255) ccTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTaa > 1:2663905/1‑47 (MQ=255) ccTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt > 1:3993698/1‑71 (MQ=255) ataCGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAg > 1:125658/1‑49 (MQ=255) ataCGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAg > 1:1964107/1‑49 (MQ=255) ataCGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGAc > 1:1129672/1‑71 (MQ=255) taCGCCAGTGCCTCTTACCCAGCAATAGTGGACAcg > 1:692192/1‑36 (MQ=255) cgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACt > 1:167607‑M1/13‑71 (MQ=255) ggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTa > 1:5565683‑M1/11‑40 (MQ=255) gatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcac > 1:4704315‑M1/10‑71 (MQ=255) gCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca < 1:1895558/70‑1 (MQ=255) cAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca > 1:3425021/1‑68 (MQ=255) cAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt < 1:1790606/71‑1 (MQ=40) cAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt < 1:7339165/71‑1 (MQ=40) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGt < 1:7527057‑M1/37‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaa > 1:2033050‑M1/4‑42 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActc > 1:1388900‑M1/4‑46 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtca < 1:4600928‑M1/50‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtca < 1:7078287‑M1/50‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGAc > 1:4874063‑M1/4‑61 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGAc > 1:4883466‑M1/4‑61 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc < 1:3369910‑M1/67‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc < 1:7144790‑M1/67‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc < 1:4956009‑M1/67‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc < 1:2717411‑M1/67‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc < 1:5867797‑M1/67‑1 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct < 1:4511362‑M1/44‑1 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtca < 1:2308668‑M1/46‑1 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtca < 1:2260680‑M1/46‑1 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag < 1:7006114‑M1/53‑1 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGa < 1:3696894‑M1/57‑1 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTc < 1:134141‑M1/60‑1 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc > 1:2766816‑M1/3‑69 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACa < 1:4424293‑M1/68‑1 (MQ=255) aTCTTTCCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACa > 1:6828019‑M1/2‑69 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa < 1:7864041‑M1/40‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAc < 1:7922229‑M1/41‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa < 1:748397‑M1/69‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa < 1:7724877‑M1/69‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa < 1:5389555‑M1/69‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACa > 1:3770460‑M1/2‑69 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACa > 1:285885‑M1/2‑69 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACa > 1:3619907‑M1/2‑69 (MQ=255) | GTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAA > W3110S.gb/314384‑314521 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |