| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 344428 | 75 (0.920) | 7 (0.090) | 4/96 | NT | 8.0% | intergenic (+213/‑200) | yahL/yahM | hypothetical protein/hypothetical protein |
| ? | W3110S.gb | = 344452 | 87 (1.090) | intergenic (+237/‑176) | yahL/yahM | hypothetical protein/hypothetical protein | |||||
CGCTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/344358‑344428‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tATGAATGTCAACCAACACATTCACAAAACATCTGCATGAGATCATTTTTTATACACCGCATGGCTGCGA < W3110S.gb/344452‑344384 CGCTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTT > 1:4605245/1‑71 CTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTT < 1:126463/69‑1 AAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTATGAATGT > 1:700616/1‑70 AAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATCATCTCATGCAGATGTTTTAT > 1:3476420/1‑64 AGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTATGAATGTCAACCAACACATTCACAA < 1:2018366/67‑1 AGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTATGAATGTCAACCAACACATTCACAA < 1:2899660/67‑1 AAATGATCTCATGCAGATGTTTTATGAATGTCAACCAACACATT > 1:3524700/1‑44 AAATGATCTCATGCAGATGTTTTATGAATGTCAACCAACACATT > 1:5123349/1‑44 CTCATGCAGATGTTTTATGAATGTCAACCAACACATTCAC > 1:1872238/1‑40 CTCATGCAGATGTTTTATGAATGTCAACCAACACATTCAC > 1:4548155/1‑40 TATGAATGTCAACCAACACATTCACAAAACATCTGCATGAGATCATTTTTTATACACa > 1:1970170/1‑57 TATGAATGTCAACCAACACATTCACAAAACATCTGCATGAGATCATTTTTTATACACCGCATGGCTG < 1:4292742/67‑1 TATGAATGTCAACCAACACATTCACAAAACATCTACATGAGATCATTTTTTATACACCGCATGGCTGCGA > 1:1852893/1‑70 TATGAATGTCAACCAACAAATTCACAAAACATCTGCATGAGATCATTTTTTATACACCGCATGGCTG < 1:6919183/67‑1 CGCTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/344358‑344428‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tATGAATGTCAACCAACACATTCACAAAACATCTGCATGAGATCATTTTTTATACACCGCATGGCTGCGA < W3110S.gb/344452‑344384 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |