| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 392207 = | 153 (1.880) | 8 (0.110) | 4/84 | NT | 5.9% | intergenic (‑73/‑32) | insE/yaiU | IS3 element protein/hypothetical protein |
| ? | W3110S.gb | 392243 = | 125 (1.790) | coding (5/1404 nt) | yaiU | hypothetical protein | |||||
GTACGGAAAGCTTCAGTATCGAACTGATCAACGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTATTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/392282‑392207‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtattggATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGACAAACTGGAACTGACCAGCGGCAACA > W3110S.gb/392243‑392311 GTACGGAAAGCTTCAGTATCGAACTGATCAACGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAG < 1:1164418/70‑1 ACGGAAAGCTTCAGTATCGAACTGATCAACGTTCACATCCAATACTCCGCCGTTAGTTACGGTGATAGTA > 1:6158603/1‑70 ACGGAAAGCTTCAGTATCGAACTGATCAACGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTAT > 1:4223242/1‑71 ACGGAAAGCTTCAGTATCGAACTGATCAACGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTAT > 1:7019381/1‑71 ACGGAAAGCTTCAGTATCGAACTGATCAACGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTAT > 1:367331/1‑71 ACGGAAAGCTTCAGTATCGAACTGATCAACGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTAT > 1:3264469/1‑71 ACGGAAAGCTTCAGTATCGAACTGATCAACGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTAT > 1:2645282/1‑71 ACGGAAAGCTTCAGTATCGAACTGATCAACGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTAT > 1:7391835/1‑71 ACGGAAAGCTTCAGTATCGAACTGATCAACGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTAT > 1:3166465/1‑71 CGGAAAGCTTCAGTATCGAACTGATCAACGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTATT > 1:6739602/1‑71 CGGAAAGCTTCAGTATCGAACTGATCAACGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTATT > 1:3893890/1‑71 CGGAAAGCTTCAGTATCGAACTGATCAACGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTAT > 1:3151725/1‑70 CGGAAAGCTTCAGTATCGAACTGATCAACGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTA > 1:3201666/1‑69 GGAAAGCTTCAGTATCGAACTGATCAACGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTATTG < 1:6033705/71‑1 GGAAAGCTTCAGTATCGAACTGATCAACGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTATTG > 1:632142/1‑71 GGAAAGCTTCAGTATCGAACTGATCAACGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTATTG > 1:6990341/1‑71 GAAAGCTTCAGTATCGAACTGATCAACGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTATTGG > 1:3087623/1‑71 AAAGCTTCAGTATCGAACTGATCAACGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTATTGG < 1:2141444/70‑1 AAGCTTCAGTATCGAACTGATCAACGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTATTGG > 1:7227554/1‑69 AAGCTTCAGTATCGAACTGATCAACGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTATTGG > 1:6911404/1‑69 AAGCTTCAGTATCGAACTGATCAAAGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTATTGG > 1:6311769/1‑69 TCGAACTGATCAACGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTATTG < 1:1343051/57‑1 TCGAACTGATCAACGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTATTG < 1:1455433/57‑1 TCGAACTGATCAACGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTATTG < 1:4174692/57‑1 CGAACTGATCAACGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTATTG < 1:4935677/56‑1 CGAACTGATCAACGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTATTG < 1:4882782/56‑1 CGAACTGATCAACGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTATTG < 1:2200284/56‑1 CAACGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTAT > 1:2954359/1‑45 CACATCCAATACACCGCCGTTAGTTACGGTGATAGTAT > 1:5725461/1‑38 CATCCAATACACCGCCGTTAGTTACGGTGATAGTATTGGATGTGAACGTTGATCAGTTCGATACTGGAGCT > 1:5638500/1‑71 TCCAATACACCGCCGTTAGTTACGGTGATAGTATTGGATGTGAACGTTGATCAGTTCGAT < 1:505196/60‑1 TCCAATACACCGCCGTTAGTTACGGTGATAGTATTGGATGTGAACGTTGATCAGTTCGAT < 1:3658158/60‑1 TCCAATACACCGCCGTTAGTTACGGTGATAGTATTGGATGTGAACGTTGATCAGTTCGAT < 1:549789/60‑1 CGCCGTTAGTTACGGTGATAGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTAC > 1:7495267/1‑67 CGCCGTTAGTTACGGTGATAGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTAC > 1:1874013/1‑67 GCCGTTAGTTACGGTGATAGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGACA < 1:3862822/71‑1 GTTAGTTACGGTGATAGTATTGGATGTGAACGTTGATCAGTTCGAT < 1:5310904/46‑1 GTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTC < 1:3881316/42‑1 TATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGACAAACTGGAACTGACCAGCGGC < 1:913441/71‑1 TATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGACAAACTGGAACTGACCAGCGGC < 1:7488637/71‑1 TATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGACAAACTGGAACTGACCAGCGGC < 1:7084768/71‑1 TATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGACAAACTGGAACT < 1:3930767/61‑1 TATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGACAAACTGGA < 1:2386368/58‑1 TATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGACAAACTGGA < 1:4740634/58‑1 TATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTA < 1:6104378/45‑1 TATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTA < 1:962627/45‑1 TATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTA < 1:2596194/45‑1 TTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGACAAACTGGAACTGACCAGCGGCAA > 1:5980050/1‑71 TTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGACAAACTGGAACTGACCAGCGGCA < 1:7154574/70‑1 TTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGACAAACTGGAACTGA > 1:5722502/1‑61 TTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGACAAACTGGAACTGA > 1:7418463/1‑61 TTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGACAAACTGGAAC > 1:7448570/1‑58 TTGGATGTGAACGTTGATCAGTTCGATACTGAAGCT < 1:163003/36‑1 TTGGATGTGAACGTTGATCAGTTCGATACTGAAGCT < 1:2516426/36‑1 TTGGATGTGAACGTTGATCAGTTCGATACTGAAGCT < 1:2655553/36‑1 TTGGATGTGAACGTTGATCAGTTCGATACTGAAGCT < 1:7165575/36‑1 TTGGATGTGAACGTTGATCAGTTCGATACTGAAGCT < 1:365686/36‑1 TTGGATGTGAACGTTGATCAGTTCGATACTGAAGCT < 1:477058/36‑1 TGGATGTGAACGTTGATCAGTTCGATACTGAAGCT < 1:3655394/35‑1 TGGATGTGAACGTTGATCAGTTCGATACTGAAGCT < 1:5781806/35‑1 GGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGACAAACTGGAACTGACCAGCGGCAACA > 1:7488757/1‑71 GGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGACAAACTGGAACTGACCAGCGGCAAC < 1:5177040/70‑1 GGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGACAAAC < 1:3707539/50‑1 GGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCC > 1:5066780/1‑38 GGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCC > 1:5719104/1‑38 GGATGTGAACGTTGATCAGTTCGATACTGAAGCTTT > 1:5027126/1‑36 GGATGTGAACGTTGATCAGTTCGATACTGAAGCTTT > 1:6233613/1‑36 GATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGACAAACTGGAACTGACCAGCGGCAACA < 1:2274823/70‑1 GTACGGAAAGCTTCAGTATCGAACTGATCAACGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTATTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/392282‑392207‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtattggATGTGAACGTTGATCAGTTCGATACTGAAGCTTTCCGTACTGACAAACTGGAACTGACCAGCGGCAACA > W3110S.gb/392243‑392311 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |