| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 392207 = | 153 (1.880) | 8 (0.110) | 4/84 | NT | 5.9% | intergenic (‑73/‑32) | insE/yaiU | IS3 element protein/hypothetical protein |
| ? | W3110S.gb | 392243 = | 125 (1.790) | coding (5/1404 nt) | yaiU | hypothetical protein | |||||
Only 100 of 225 total aligned reads displayed.
CTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTC > W3110S.gb/392137‑392277 | tgactgaGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGATTACAACCTGTACGc > 1:3960586/1‑70 (MQ=255) gttgccgctggtcagttccagtttgtcagtacggaaagcttcagtatcgaactgatcaacgttcacatcc < 1:5177040‑M1/2‑1 (MQ=255) ctgaGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGATTACAACCTGTACGCCaa > 1:3478380/1‑70 (MQ=255) tgaGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGATTACAACCTGTACGCCAATa > 1:2988457/1‑71 (MQ=255) gccgctggtcagttccagtttgtcagtacggaaagcttcagtatcgaactgatcaacgttcacatCCAATa < 1:913441‑M1/6‑1 (MQ=255) gccgctggtcagttccagtttgtcagtacggaaagcttcagtatcgaactgatcaacgttcacatCCAATa < 1:7488637‑M1/6‑1 (MQ=255) gTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGATTACAACCTGTACGCCAATACTATc < 1:3995139/71‑1 (MQ=255) tttACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGATTACAACCTGTACGCCAATACTATCa > 1:7090509/1‑71 (MQ=255) tttACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGATTACAACCTGTACGCCAATACTATCa > 1:5948003/1‑71 (MQ=255) tttACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGATTACAACCTGTACGCCAATACTATCa > 1:4316446/1‑71 (MQ=255) tcagttccagtttgtcagtacggaaagcttcagtatcgaactgatcaacgttcacatCCaa > 1:5722502‑M1/58‑61 (MQ=255) tACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGATTACAACCTGTACGCCAAt > 1:1072371/1‑62 (MQ=255) tACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGATTACAACCTGTACGCCAAt > 1:3422410/1‑62 (MQ=255) tACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGATTACAACCTGTACGCCAATACTATCAcc > 1:1658942/1‑71 (MQ=255) gttccagtttgtcagtacggaaagcttcagtatcgaactgatcaacgttcacatCCaa > 1:7448570‑M1/55‑58 (MQ=255) tccagtttgtcagtacggaaagcttcagtatcgaactgatcaacgttcacatCCAATa < 1:4740634‑M1/6‑1 (MQ=255) aCTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGATTACAACCTGTACGCCAATa > 1:3189617/1‑58 (MQ=255) aCTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGtaac > 1:3747573/1‑71 (MQ=255) aCTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGtaac > 1:6558140/1‑71 (MQ=255) cTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGtaac > 1:7910844/1‑70 (MQ=255) cTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGtaac > 1:6702413/1‑70 (MQ=255) ttAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGtaa > 1:4125740/1‑68 (MQ=255) gCCGCGTGTCCACTATTGCTGGGTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAAcg < 1:1259656/71‑1 (MQ=255) gCCGCGTGTCCACTATTGCTGGGTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAAcg < 1:2349197/71‑1 (MQ=255) gcgTGTCCACTATTGCTGGGTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGtaact > 1:1495504/1‑64 (MQ=255) gcgTGTCCACTATTGCTGGGTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGtaact > 1:7363143/1‑64 (MQ=255) gcgTGTCCACTATTGCTGGGTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAAcggcg > 1:4386178/1‑71 (MQ=255) cgTGTCCACTATTGCTGGGTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAAcggcgg < 1:5914583/71‑1 (MQ=255) gtgtCCACTATTGCTGGGTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGgt < 1:5622844/71‑1 (MQ=255) gtgtCCACTATTGCTGGGTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGgt > 1:523869/1‑71 (MQ=255) gtacggaaagcttcagtatcgaactgatcaacgttcacatCCAATACTATCACCGTAACTAAcggcg > 1:7495267‑M1/41‑67 (MQ=255) tCCACTATTGCTGGGTAAGATCAGATTACAACCTGTACGCCAATACTATCAcc < 1:4916457/53‑1 (MQ=255) ggaaagcttcagtatcgaactgatcaacgttcacatcc > 1:5066780‑M1/37‑38 (MQ=255) gaaagcttcagtatcgaactgatcaacgttcacatCCAATAc < 1:3881316‑M1/7‑1 (MQ=255) aTTGCTGGGTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGtaactaa > 1:2644458/1‑55 (MQ=255) ttGCTGGGTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGAtg > 1:5903696/1‑71 (MQ=255) agcttcagtatcgaactgatcaacgttcacatCCaa < 1:2516426‑M1/4‑1 (MQ=255) agcttcagtatcgaactgatcaacgttcacatCCaa < 1:163003‑M1/4‑1 (MQ=255) agcttcagtatcgaactgatcaacgttcacatCCaa < 1:365686‑M1/4‑1 (MQ=255) agcttcagtatcgaactgatcaacgttcacatCCa < 1:5781806‑M1/3‑1 (MQ=255) tGCTGGGTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGAtgt > 1:440624/1‑71 (MQ=255) cTGGGTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTAt > 1:616771/1‑62 (MQ=255) cTGGGTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTAt > 1:1841510/1‑62 (MQ=255) tGGGTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTAtt < 1:6232762/62‑1 (MQ=255) tGGGTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGaa > 1:6687042/1‑71 (MQ=255) ggTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACg > 1:5970587/1‑71 (MQ=255) ggTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACg < 1:1997349/71‑1 (MQ=255) gTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGa < 1:3081784/62‑1 (MQ=255) gTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGt < 1:834893/71‑1 (MQ=255) gTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGt > 1:4079143/1‑71 (MQ=255) gTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGt < 1:3437296/71‑1 (MQ=255) gTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGt > 1:333574/1‑71 (MQ=255) tAAGATCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTg > 1:3784607/1‑59 (MQ=255) tAAGATCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGtt < 1:1185083/71‑1 (MQ=255) tAAGATCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGt < 1:1136803/70‑1 (MQ=255) atcgaactgatcaacgttcacatCCAATACTATCACCGtaactaac < 1:5310904‑M1/23‑1 (MQ=255) atcgaactgatcaacgttcacatCCAATACTATCACCGTAACTAACGGCGGTGTATTGGa < 1:549789‑M1/37‑1 (MQ=255) aaGATCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGt > 1:4289878/1‑69 (MQ=255) aGATCAGATTACAACCTGTACGCCAATACTATCACCGt < 1:4442554/38‑1 (MQ=255) aGATCAGATTACAACCTGTACGCCAATACTATCACCGt < 1:7860177/38‑1 (MQ=255) aTCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATc < 1:2571724/71‑1 (MQ=255) tCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAAcggc > 1:3768987/1‑45 (MQ=255) tCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAAcggc > 1:2073141/1‑45 (MQ=255) tCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGAt > 1:4531804/1‑69 (MQ=255) cAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGAtgtg > 1:2132373/1‑59 (MQ=255) cAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAg > 1:2784366/1‑71 (MQ=255) aGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAg < 1:3718539/70‑1 (MQ=255) aGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAg < 1:6144984/70‑1 (MQ=255) aGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAg < 1:6049544/70‑1 (MQ=255) aGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAg < 1:1546208/70‑1 (MQ=255) gATTACAACCTGTACGCCAATACTATCACCGTAACTAAcggcg < 1:7076219/43‑1 (MQ=255) gATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGt > 1:1002101/1‑70 (MQ=255) aTTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTg > 1:4823419/1‑63 (MQ=255) ttACAACCTGTACGCCAATACTTTCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCg < 1:7529878/71‑1 (MQ=255) tACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTAtt > 1:4528176/1‑47 (MQ=255) tACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGa > 1:6489983/1‑71 (MQ=255) aCAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGaa > 1:2230748/1‑55 (MQ=255) aCAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGaa > 1:6428766/1‑55 (MQ=255) cAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGa < 1:2389082/69‑1 (MQ=255) cAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATa > 1:6841357/1‑71 (MQ=255) aaCCTTTACGCCAATACTATCACCGTAACTAACGGCGgtg < 1:6958758/40‑1 (MQ=255) aaCCTGTACGCCATTACTATCACCGTAAATAACGGCGgtg < 1:5043302/40‑1 (MQ=37) aaCCTGTACGCCAATACTATCACCGTAAGTAACGGCGGTGTATTGGATGTGAACg > 1:7157571/1‑55 (MQ=255) aCCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACt < 1:1325256/71‑1 (MQ=255) ccTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTa > 1:6984866/1‑40 (MQ=255) ccTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTa > 1:6658319/1‑40 (MQ=255) ccTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTTAACGTTGATCAGTTCGATACTg < 1:5670495/71‑1 (MQ=255) ccTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACt > 1:2078387/1‑70 (MQ=255) ccTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTg < 1:2833239/71‑1 (MQ=255) tGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGa > 1:742282/1‑64 (MQ=255) tGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGa > 1:2720824/1‑64 (MQ=255) aCGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGa > 1:4603723/1‑40 (MQ=255) cGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTc < 1:2761687/58‑1 (MQ=255) cGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCtt > 1:7216280/1‑71 (MQ=255) cGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCtt > 1:2322478/1‑71 (MQ=255) cGCCAATACTATAACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCt < 1:1773431/70‑1 (MQ=255) gCCAATACTATCACCGTAACTAACGGCGGTGTATTGGAtgt > 1:4666390/1‑41 (MQ=255) gCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACg > 1:5734054/1‑46 (MQ=255) gCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCttt < 1:249530/71‑1 (MQ=255) CCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACTTTGATCAGTTCGATACTGAAGCtt > 1:6311769‑M1/1‑69 (MQ=255) | CTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGATTACAACCTGTACGCCAATACTATCACCGTAACTAACGGCGGTGTATTGGATGTGAACGTTGATCAGTTCGATACTGAAGCTTTC > W3110S.gb/392137‑392277 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |