| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 1201979 = | 125 (1.540) | 8 (0.110) | 3/88 | NT | 6.4% | coding (405/1128 nt) | intE | predicted integrase |
| ? | W3110S.gb | 1202003 = | 121 (1.650) | coding (381/1128 nt) | intE | predicted integrase | |||||
CAAAAAGCTAAACCAGTATCCTTGCTCAGAGAACGAGCAGGAATGAAGTTGATCTCAGCCGTTGATGTCAGAGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/1202053‑1201979‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagatCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTT > W3110S.gb/1202003‑1202072 CAAAAAGCTAAACCAGTATCCTTGCTCAGAGAACGAGCAGGAATGAAGTTGATCTCAGCCGTTGATGTCAG < 1:4340731/71‑1 AAAAAGCTAAACCAGTATCCTTGCTCAGAGAACGAGCAGGAATGAAGTTGATCTCAGCCGTTGATGTCAGA < 1:5714118/71‑1 AAAAGCTAAACCAGTATCCTTGCTCAGAGAACGAGCAGGAATGAAGTTGATCTCAGCCGTTGATGTCAGAG < 1:3244935/71‑1 AAAAGCTAAACCAGTATCCTTGCTCAGAGAACGAGCAGGAATGAAGTTGATCTCAGCCGTTGATGTCAGAG < 1:2276520/71‑1 AAAAGCTAAACCAGTATCCTTGCTCAGAGAACGAGCAGGAATGAAGTTGATCTCAGCCGTTGATGTCAGA < 1:6705380/70‑1 AAAGCTAAACCAGTATCCTTGCTCAGAGAACGAGCAGGAATGAAGTTGATCTCAGCCGTTGATGTCAGAG < 1:4032892/70‑1 AAACCAGTATCCTTGCTCAGAGAACGAGCAGGAATGAAGTTGATCTCAGCCGTTGATGTCAGAGA < 1:5293620/65‑1 GTATCCTTGCTCAGAGAACGAGCAGGAATGAAGTTGATCTCAGCCGTTGATGTCAGAGAT < 1:6798267/60‑1 GTATCCTTGCTCAGAGAACGAGCAGGAATGAAGTTGATCTCAGCCGTTGATGTCAGAGAT < 1:3041759/60‑1 GTATCCTTGCTCAGAGAACGAGCAGGAATGAAGTTGATCTCAGCCGTTGATGTCAGAGAT < 1:6788980/60‑1 GTATCCTTGCTCAGAGAACGAGCAGGAATGAAGTTGATCTCAGCCGTTGATGTCAGAGAT < 1:883056/60‑1 GTATCCTTGCTCAGAGAACGAGCAGGAATGAAGTTGATCTCAGCCGTTGATGTCAGAGAT < 1:126656/60‑1 CTCAGAGAACGAGCAGGAATGAAGTTGATCTCAGCCGTTGATGTCAG < 1:5174166/47‑1 CTCAGAGAACGAGCAGGAATGAAGTTGATCTCAGCCGTTGATGTCAG < 1:7437934/47‑1 CAGAGAACGAGCAGGAATGAAGTTGATCTCAGCCGTTGATGTCAGAG > 1:7051376/1‑47 CAGAGAACGAGCAGGAATGAAGTTGATCTCAGCCGTTGATGTCAGAG > 1:726/1‑47 TGATCTCAGCCGTTGATGTCAGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTA < 1:498922/69‑1 ATCTCAGCCGTTGATGTCAGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGC > 1:1100989/1‑69 CCGTTGATGTCAGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGT > 1:710661/1‑69 CCGTTGATGTCAGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGAT > 1:3213159/1‑51 CCGTTGATGTCAGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGAT > 1:6606984/1‑51 CCGTTGATGTCAGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGAT > 1:2807146/1‑51 CCGTTGATGTCAGAGATCAACTTCATTCCTGCTCGT > 1:4434499/1‑36 CCGTTGATGTCAGAGATCAACTTCATTCCTGCTCGT > 1:4901812/1‑36 GAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAG > 1:1245267/1‑71 GAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCT < 1:925880/51‑1 AGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGT > 1:1325384/1‑71 AGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAG < 1:2384407/70‑1 AGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTG < 1:5912755/68‑1 AGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTG < 1:2896514/68‑1 AGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTT > 1:4514252/1‑46 AGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTT > 1:4302279/1‑46 GATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTC < 1:7209382/71‑1 ATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCT > 1:7417095/1‑71 ATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCT > 1:356879/1‑71 ATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCT > 1:5833048/1‑48 ATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCT > 1:3154198/1‑48 ATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGA < 1:2046620/35‑1 ATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGA < 1:1523043/35‑1 TCAACTTGATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTT < 1:2362150/71‑1 TCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCT > 1:1386553/1‑70 TCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTG > 1:3295333/1‑52 TCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTG > 1:2520634/1‑52 CAAAAAGCTAAACCAGTATCCTTGCTCAGAGAACGAGCAGGAATGAAGTTGATCTCAGCCGTTGATGTCAGAGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/1202053‑1201979‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagatCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTT > W3110S.gb/1202003‑1202072 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |