| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 1201979 = | 125 (1.540) | 8 (0.110) | 3/88 | NT | 6.4% | coding (405/1128 nt) | intE | predicted integrase |
| ? | W3110S.gb | 1202003 = | 121 (1.650) | coding (381/1128 nt) | intE | predicted integrase | |||||
Only 100 of 195 total aligned reads displayed.
TCTTGGCCGCCCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTT > W3110S.gb/1201934‑1202072 | cTTGGCCGCCCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCa < 1:3609499/70‑1 (MQ=255) ggCCGCCCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCaa < 1:3768779/68‑1 (MQ=255) gccgccCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTc < 1:5812466/71‑1 (MQ=255) ccgccCAGCGGCGATATACTCATCAAGCTATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCa > 1:3915228/1‑71 (MQ=255) cgccCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCAt < 1:4452212/71‑1 (MQ=255) gccCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCa < 1:3552889/63‑1 (MQ=255) gccCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCa < 1:5984772/63‑1 (MQ=255) gccCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCa < 1:652739/63‑1 (MQ=255) gccCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCa > 1:4709336/1‑69 (MQ=255) cccAGCGGCGATATACTCATCAAGCAATTGTGCTATA‑‑TCTGACATCAACGGCTGAGATCAACTTCATTCCt < 1:7362923/71‑1 (MQ=255) ccAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTcc > 1:4627227/1‑71 (MQ=255) ccAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTcc > 1:432318/1‑71 (MQ=255) aGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTg > 1:5863933/1‑71 (MQ=255) aGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTg < 1:4239905/71‑1 (MQ=255) gcggcgATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGc > 1:1678231/1‑71 (MQ=255) cgATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGt > 1:5368618/1‑71 (MQ=255) atatACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTtc > 1:882632/1‑71 (MQ=255) ataCTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATc > 1:7145421/1‑49 (MQ=255) ataCTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATc > 1:1002637/1‑49 (MQ=255) ataCTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATc > 1:7436712/1‑49 (MQ=255) ataCTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATc > 1:260314/1‑49 (MQ=255) ataCTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATc > 1:5478509/1‑49 (MQ=255) taCTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTctct < 1:6890963/71‑1 (MQ=255) taCTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTctct < 1:4782764/71‑1 (MQ=255) taCTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTctct < 1:5694972/71‑1 (MQ=255) taCTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTctct < 1:1556865/71‑1 (MQ=255) tcatcaTGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTctct < 1:1129590/68‑1 (MQ=255) catcaAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAg > 1:5768365/1‑70 (MQ=255) catcaAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGATCGTTCTCTGAg > 1:7171302/1‑70 (MQ=255) atcaAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATc < 1:4527633/43‑1 (MQ=255) atcaAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTc > 1:5120487/1‑59 (MQ=255) atcaAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTc > 1:557223/1‑59 (MQ=255) atcaAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTctct > 1:2505510/1‑66 (MQ=255) tcaAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGc > 1:4094099/1‑69 (MQ=255) tcaAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCaa < 1:7866978/71‑1 (MQ=255) caAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCaa < 1:6833049/43‑1 (MQ=255) caAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGc > 1:6720456/1‑68 (MQ=255) caAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAg > 1:3218336/1‑71 (MQ=255) caAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAg > 1:6700700/1‑71 (MQ=255) aaGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAg > 1:6314486/1‑66 (MQ=255) aaGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAg > 1:2139993/1‑66 (MQ=255) aaGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAg > 1:7779480/1‑66 (MQ=255) gCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGa > 1:2922220/1‑70 (MQ=255) aaTTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATAc > 1:5132666/1‑71 (MQ=255) aaTTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATAc < 1:3492381/71‑1 (MQ=255) ttGTGCTATATCTCTGACATCAACGGCTGAGATCAAc > 1:933221/1‑37 (MQ=255) ttGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGtt < 1:7010840/53‑1 (MQ=255) ttGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTg > 1:5196234/1‑71 (MQ=255) gtgCTATATCTCTGACATCAACGGCTGAGATCAACTTCAt > 1:4804113/1‑40 (MQ=255) gtgCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTtct > 1:1635554/1‑53 (MQ=255) gtgCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGa > 1:623642/1‑57 (MQ=255) gtgCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGa > 1:2718235/1‑57 (MQ=255) gCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGtt > 1:1533001/1‑70 (MQ=255) cTATATCTCTGACATCAACGGCTGAGATCAACTTGATTCCTGCTCGTTCTCTGAGCAAGGATACTGGttt < 1:7068440/70‑1 (MQ=255) cTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCt > 1:2527954/1‑41 (MQ=255) cTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGttt < 1:1513004/70‑1 (MQ=255) tgatctcagccgttgatgtcagagatCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTa < 1:498922‑M2/43‑1 (MQ=255) atatCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCGAGGATACTGGTTTAGc > 1:5061032/1‑71 (MQ=255) atatCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGc > 1:139557/1‑71 (MQ=255) tatCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCt > 1:2238090/1‑41 (MQ=255) tatCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCt > 1:4354195/1‑41 (MQ=255) tatCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGt < 1:7577046/65‑1 (MQ=255) atctcagccgttgatgtcagagatCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGc > 1:1100989‑M2/25‑69 (MQ=255) ATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATAc < 1:6788980‑M1/60‑1 (MQ=255) ATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATAc < 1:3041759‑M1/60‑1 (MQ=255) CTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCtttt < 1:2276520‑M1/71‑1 (MQ=255) CTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCtttt < 1:3244935‑M1/71‑1 (MQ=255) CTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCttt < 1:4032892‑M1/70‑1 (MQ=255) tGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGt > 1:4108659/1‑71 (MQ=255) tGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGt > 1:1384919/1‑71 (MQ=255) gACATCAACGGCTGAGATCAACTTCATTCCTGCTCGtt > 1:1907539/1‑38 (MQ=255) gACATCAACGGCTGAGATCAACTTCATTCCTGCTCGtt > 1:2011700/1‑38 (MQ=255) gACAACAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCaa > 1:1079882/1‑48 (MQ=255) ccgttgatgtcagagatCAACTTCATTCCTGCTCGt > 1:4901812‑M2/18‑36 (MQ=255) ccgttgatgtcagagatCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGAt > 1:6606984‑M2/18‑51 (MQ=255) ccgttgatgtcagagatCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGAt > 1:2807146‑M2/18‑51 (MQ=255) ccgttgatgtcagagatCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGt > 1:710661‑M2/18‑69 (MQ=255) aCATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGtt < 1:6133179/70‑1 (MQ=255) aCATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGtt > 1:4952381/1‑70 (MQ=255) aCATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGt < 1:896619/69‑1 (MQ=255) aTCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGttt < 1:5153851/69‑1 (MQ=255) aTCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGttt < 1:6361559/69‑1 (MQ=255) aaCGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGa < 1:318839/45‑1 (MQ=255) aaCGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATa > 1:7386135/1‑47 (MQ=255) aaCGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAg > 1:4986335/1‑70 (MQ=255) aaCGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAg < 1:7746799/70‑1 (MQ=255) cGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGa > 1:2870554/1‑36 (MQ=255) cGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATa > 1:3670/1‑45 (MQ=255) cGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCttt < 1:9950/58‑1 (MQ=255) cGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCttt < 1:722/58‑1 (MQ=255) cGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCttt < 1:3350296/58‑1 (MQ=255) gCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTGTAGCTTTTTGTTTATAGGTGtt > 1:7681007/1‑71 (MQ=255) tGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGt < 1:3119085/46‑1 (MQ=255) gagatCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAg > 1:1245267‑M2/6‑71 (MQ=255) agatCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTg < 1:5912755‑M2/64‑1 (MQ=255) agatCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGt > 1:1325384‑M2/5‑71 (MQ=255) tCAACTTGATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCtt < 1:2362150‑M2/70‑1 (MQ=255) cAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGttt < 1:2772039/54‑1 (MQ=255) cAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTc > 1:6820760/1‑68 (MQ=255) cAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCt > 1:5443951/1‑69 (MQ=255) | TCTTGGCCGCCCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTT > W3110S.gb/1201934‑1202072 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |