| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 1401345 = | 60 (0.740) | 9 (0.120) | 5/88 | NT | 16.7% | intergenic (‑105/+90) | fnr/ogt | DNA‑binding transcriptional dual regulator, global regulator of anaerobic growth/O‑6‑alkylguanine‑DNA:cysteine‑protein methyltransferase |
| ? | W3110S.gb | 1401365 = | 36 (0.490) | intergenic (‑125/+70) | fnr/ogt | DNA‑binding transcriptional dual regulator, global regulator of anaerobic growth/O‑6‑alkylguanine‑DNA:cysteine‑protein methyltransferase | |||||
TGCCAGCTTGTTCACACTTTTATGTAAAGTTACCCTTAACAACTTAAGGGTTTTCAAATAGATAGACATATATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/1401419‑1401345‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatttGAAAACCCTTAAGTTGTTAAGGGTAACTTTACATAAAAGTGTGAACAAGCTGGCACAAATTGTTTAATGT > W3110S.gb/1401365‑1401434 TGCCAGCTTGTTCACACTTTTATGTAAAGTTACCCTTAACAACTTAAGGGTTTTCAAATAGATAGACATAT < 1:2766910/71‑1 CCAGCTTGTTCACACTTTTATGTAAAGTTACCCTTAACAACTTAAGGGTTTTCAAATAGATAGACATATAT < 1:3856956/71‑1 AGCTTGTTCACACTTTTATGTAAAGTTACCCTTAACAACTTAAGGGTTTTCAAATAGATAGACATATATTT < 1:1490668/71‑1 GTTCACACTTTTATGTAAAGTTACCCTTAACAACTTAAGGGTTTTCAAATAGATAGACATATATT < 1:409006/65‑1 TGTAAAGTTACCCTTAACAACTTAAGGGTTTTCAAATAGATAGACATAT < 1:4575712/49‑1 TGTAAAGTTACCCTTAACAACTTAAGGGTTTTCAAATAGATAGACATAT < 1:7821362/49‑1 CAAATAGATAGACATATATTTGAAAACCCTTAAGTTGTTAAGGGTAACTT < 1:7102355/50‑1 CAAATAGATAGACATATATTTGAAAACCCTTAAGTTGTTAAGGGTAACTT < 1:7218663/50‑1 AAATAGATAGACATATATTTGAAAACCCTTAACAACTTAAGGGTAACTTTACATAAAAGTGTGAACAAGCT > 1:1194087/1‑71 AATAGATAGACATATATTTGAAAACCCTTAAGTTGTTAAGGGTAACTTT > 1:3875769/1‑49 ATAGATAGACATATATTTGAAAACCCTTAAGTTGTTAAGGGTAACTTTACATAAAA > 1:7427792/1‑56 ATAGATAGACATATATTTGAAAACCCTTAAGTTGTTAAGGGTAACTTTACATAAAA > 1:5642294/1‑56 ATAGATAGACATATATTTGAAAACCCTTAAGTTGTTAAGGGTAA > 1:1059736/1‑44 ATAGATAGACATATATTTGAAAACCCTTAAGTTGTTAAGGGTAA > 1:5312079/1‑44 AGACATATATTTGAAAACCCTTAAGTTGTTAAGGGTAAC > 1:2383317/1‑39 ATATATTTGAAAACCCTTAAGTTGTTAAGGGTAACTTTACATAAAAGTGTGAACAAGCTGGCACAAATTGT < 1:6623554/71‑1 TATTTGAAAACCCTTAAGTTGTTAAGGGTAACTTTACATAA < 1:2485515/41‑1 TATTTGAAAACCCTTAAGTTGTTAAGGGTAACTTTACATAA < 1:2320229/41‑1 ATTTGAAAACCCTTAAGTTGTTAAGGGTAACTTTACATAAAAGTGTGAACAAGCTGGCACAAATTGTTTAA > 1:7655158/1‑71 ATTTGAAAACCCTTAAGTTGTTAAGGGTAACTTTACATAAAAGTGTGAACAAGCTGGCACAAAT > 1:7866821/1‑64 TTTGAAAACCCTTAAGTTGTTAAGGGTAACTTTACATAAAAGTGTGAACAAGCTGGCACAAATTGTTTAA > 1:3283150/1‑70 TTTGAAAACCCTTAAGTTGTTAAGGGTAACTTTACATAAAA < 1:4074255/41‑1 TTTGAAAACCCTTAAGTTGTTAAGGGTAACTTTACATAAA < 1:5738446/40‑1 TTGAAAACCCTTAAGTTGTTAAGGGTAACTTTACATAAAAGTGTGAACAAGCTGGCACAAATTGTTTAATG > 1:3093446/1‑71 TTGAAAACCCTTAAGTTGTTAAGGGTAACTTTACATAAAAGTG < 1:45496/43‑1 TTGAAAACCCTTAAGTTGTTAAGGGTAACTTTACATAAAAGTG < 1:1429549/43‑1 TTGAAAACCCTTAAGTTGTTAAGGGTAACTTTAAATAAAA > 1:4839623/1‑40 TGAAAACCCTTAAGTTGTTAAGGGTAACTTTACATAAAAGTGTGAACAAGCTGGCACAAATTGTTTAATGT > 1:4323770/1‑71 TGAAAACCCTTAAGTTGTTAAGGGTAACTTTACATAAAAGTGTGAACAAGCTGGCACAAATTGTTTAATGT > 1:2667395/1‑71 TGAAAACCCTTAAGTTGTTAAGGGTAACTTTACATAAAAGTGTGAACAAGCTGGCACAAATTGTTTAATGT > 1:237251/1‑71 TGAAAACCCTTAAGTTGTTAAGGGTAACTTTACATAAAAGTGTG < 1:3025054/44‑1 TGCCAGCTTGTTCACACTTTTATGTAAAGTTACCCTTAACAACTTAAGGGTTTTCAAATAGATAGACATATATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/1401419‑1401345‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatttGAAAACCCTTAAGTTGTTAAGGGTAACTTTACATAAAAGTGTGAACAAGCTGGCACAAATTGTTTAATGT > W3110S.gb/1401365‑1401434 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |