New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | W3110S.gb | = 1515970 | 54 (0.660) | 9 (0.120) | 3/90 | NT | 13.4% | coding (426/942 nt) | ydcU | predicted spermidine/putrescine transporter subunit |
? | W3110S.gb | = 1515984 | 67 (0.900) | coding (440/942 nt) | ydcU | predicted spermidine/putrescine transporter subunit |
GAAAATGAAAGCGTTTTTTTATATTGCGGTAATGTTGCCGATGTGGGCGAGCTACATTGTTAAAGCCTATGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/1515898‑1515970 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccAGCAATAACGTCCAGGCATAGGCTTTAACAATGTAGCTCGCCCACATCGGCAACAT < W3110S.gb/1515984‑1515929 GAAAATGAAAGCGTTTTTTTATATTGCGGTAATGTTGCCGATGTGGGCGAGCTACATTGTTAAAGCCTATG < 1:5745508/71‑1 TTGCCGATGTGGGCGAGCTACATTGTTAAAGCCTATGCCAGCAATAACGTCCAGGCATA > 1:3156272/1‑59 TTGCCGATGTGGGCGAGCTACATTGTTAAAGCCTATGCCAGCAATAACGTCCAGGCATA > 1:3390236/1‑59 TTGCCGATGTGGGCGAGCTACATTGTTAAAGCCTATGCCAGCAATAACGTCCAGGCATA > 1:5686581/1‑59 GATGTGGGCGAGCTACATTGTTAAAGCCTATGCCAGCAATAACGTCCAG < 1:1895797/49‑1 GATGTGGGCGAGCTACATTGTTAAAGCCTATGCCAGCAATAACGTCCAG < 1:4631600/49‑1 GATGTGGGCGAGCTACATTGTTAAAGCCTATGCCAGCAATAACGTCCAG < 1:6869205/49‑1 TGTGGGCGAGCTACATTGTTAAAGCCTATGCCAGCAATAACGTCCAGGC > 1:3959457/1‑49 TGTGGGCGAGCTACATTGTTAAAGCCTATGCCAGCAATAACGTCCAGGC > 1:6059512/1‑49 TGTGGGCGAGCTACATTGTTAAAGCCTATGCCAGCAATAACGTCCAGGC > 1:6524740/1‑49 CAGCAATAACGTCCAGGCATAGGCTTTAACAATGTAGCTCGCCCACATCGGCAACAT < 1:7787400/57‑1 GAAAATGAAAGCGTTTTTTTATATTGCGGTAATGTTGCCGATGTGGGCGAGCTACATTGTTAAAGCCTATGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/1515898‑1515970 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccAGCAATAACGTCCAGGCATAGGCTTTAACAATGTAGCTCGCCCACATCGGCAACAT < W3110S.gb/1515984‑1515929 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |