| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2070745 | 66 (0.810) | 4 (0.050) | 3/88 | NT | 6.3% | intergenic (‑1287/‑27) | insH/yoeA | IS5 transposase and trans‑activator/CP4‑44 prophage region; ECK1989:JW5326:b1995; predicted disrupted hemin or colicin receptor |
| ? | W3110S.gb | = 2070758 | 60 (0.820) | intergenic (‑1300/‑14) | insH/yoeA | IS5 transposase and trans‑activator/CP4‑44 prophage region; ECK1989:JW5326:b1995; predicted disrupted hemin or colicin receptor | |||||
AATTTATGAAGATGACAATAATTATAGATATATGAGAACATAAATGAAAATAATTATCATTACAGTAATCATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2070673‑2070745‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcattAATACAAAGTACAAATGATTACTGTAATGATAATTATTTTCATTTATGTTCTCATATATCTATAATTA < W3110S.gb/2070758‑2070691 AATTTATGAAGATGACAATAATTATAGATATATGAGAACATAAATGAAAATAATTATCATTACAGTAATCA < 1:3028854/71‑1 TGAAGATGACAATAATTATAGATATATGAGAACATAAATGAAAATAATTATCATTACAGTAATCAT < 1:7868298/66‑1 GACAATAATTATAGATATATGAGAACATAAATGAAAATAATTATCATTACAGTAATCA > 1:7775001/1‑58 ATATATGAGAACATAAATGAAAATAATTATCATTACAGTAATCAT < 1:457102/45‑1 AGAACATAAATGAAAATAATTATCATTACAGTAATCATTAATACAAAGTAC > 1:842629/1‑51 ATAATTATCATTACAGTAATCATTAATACAAAGTACA < 1:248517/37‑1 AATTATCATTACAGTAATCATTAATACAAAGTACAAA > 1:287433/1‑37 AATTATCATTACAGTAATCATTAATACAAAGTACAAA > 1:7807181/1‑37 aaTAATACAAAGTACAAATGATTACTGTAATGATAATTATT > 1:3861011/3‑41 ATTAATACAAAGTACAAATGATTACTGTAATGATAATTATTTTCATTTATGTTCTCATATATCTATAATTA > 1:2070357/1‑71 ATTAATACAAAGTACAAATGATTACTGTAATGATAATTATTTTCATTTATGTTCTCATATATCTATAATTA > 1:4645990/1‑71 ATTAATACAAAGTACAAATGATTACTGTAATGATAATTATTTTCATTTATGTTCTCATATATCTATAATTA > 1:5277639/1‑71 ATTAATACAAAGTACAAATGATTACTGTAATGATAATTATTTTCATTTATGTTCTCATATATCTATAATTA > 1:6481500/1‑71 ATTAATACAAAGTACAAATGATTACTGTAATGATAATTATTTTCATTTATGTTCT > 1:4988748/1‑55 ATTAATACAAAGTACAAATGATTACTGTAATGATAATTATT > 1:4975186/1‑41 ATTAATACAAAGTACAAATGATTACTGTAATGATAATTATT > 1:756372/1‑41 AATTTATGAAGATGACAATAATTATAGATATATGAGAACATAAATGAAAATAATTATCATTACAGTAATCATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2070673‑2070745‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcattAATACAAAGTACAAATGATTACTGTAATGATAATTATTTTCATTTATGTTCTCATATATCTATAATTA < W3110S.gb/2070758‑2070691 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |