| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2505861 | 72 (0.880) | 4 (0.060) | 4/86 | NT | 5.8% | coding (33/735 nt) | ypdB | predicted response regulator in two‑component system withYpdA |
| ? | W3110S.gb | = 2505867 | 66 (0.920) | coding (39/735 nt) | ypdB | predicted response regulator in two‑component system withYpdA | |||||
CGCCTCACAGGCTACGTTATTGCTTTGAGCCGGAGTGATATTGTGAAAGTCATCATTGTTGAAGACGAATTCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2505787‑2505861‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcctgTTGTGCCAGGAATTCGTCTTCAACAATGATGACTTTCACAATATCACTCCGGCTCAAAGCAATAACG < W3110S.gb/2505867‑2505801 CGCCTCACAGGCTACGTTATTGCTTTGAGCCGGAGTGATATTGTGAAAGTCATCATTGTTGAAGACGAATT > 1:6756260/1‑71 ACAGGCTACGTTATTGCTTTGAGCCGGAGTGATATTGTGAAAGTCATCATTGTTGAAGACGAATTCCTG < 1:4530521/69‑1 GGCTACGTTATTGCTTTGAGCCGGAGTGATATTGTGAAAGTCATCATTGTTGAAGACGAATTCCT > 1:7277673/1‑65 GCTACGTTATTGCTTTGAGCCGGAGTGATATTGTGAAAGTCATCATTGTTGAAGACGAATTC < 1:929643/62‑1 TACGTTATTGCTTTGAGCCGGAGTGATATTGTGAAAGTCATCATTGTTGAAGACGAATTCCT > 1:5182131/1‑62 TACGTTATTGCTTTGAGCCGGAGTGATATTGTGAAAGTCATCATTGTTGAAGACGAATTCC > 1:4955335/1‑61 CGTTATTGCTTTGAGCCGGAGTGATATTGTGAAAGTCATCATTGTTGAAGACGAGTTCCTGTTGTGCCA < 1:6450834/69‑1 GCTTTGAGCCGGAGTGATATTGTGAAAGTCATCATTGTTGAAGACGAATTCCTGTTGTGCCAGGAATT > 1:4364438/1‑68 GAGCCGGAGTGATATTGTGAAAGTCATCATTGTTGAAGACGAATTCC > 1:3731517/1‑47 AGCCGGAGTGATATTGTGAAAGTCATCATTGTTGAAGACGAATTCC < 1:6353974/46‑1 AAAGTCATCATTGTTGAAGACGAATTCCTGTTGTGCCAGG < 1:253177/40‑1 CATTGTTGAAGACGAATTCCTGTTGTGCCAGGAAT < 1:1106690/35‑1 TCCTGTTGTGCCAGGAATTCGTCTTCAACAATGATGACTTTCACAATATCACTCCGGCTCAAAGCAATAAC > 1:6883039/1‑71 CCTGTTGTGCCAGGAATTCGTCTTCAACAATGATGACTTTCACAATATCACTCCGGCTCAAAGCAATAAC < 1:7760858/70‑1 CCTGTTGTGCCAGGAATTCGTCTTCAACAATGATGACTTTCACAATATCACTCCGGCTCAAAGCAATAAC < 1:6436820/70‑1 CCTGTTGTGCCAGGAATTCGTCTTCAACAATGATGACTTTCACAATATCACTCCGGCTCAAA > 1:5963574/1‑62 CCTGTTGTGCCAGGAATTCGTCTTCAACAATGATGACTTTCACAATATCACTCCGGCTCAAA > 1:2675993/1‑62 CCTGTTGTGCCAGGAATTCGTCTTCAACAATGATGACTTTCACAATATCACTCCGGCTCAAA > 1:550339/1‑62 CCTGTTGTGCCAGGAATTCGTCTTCAACAATGATGACTTTCACAATATCACTCCGGCTCAAA > 1:3984228/1‑62 CCTGTTGTGCCAGGAATTCGTCTTCAACAATGATGACTTTCACAATATCACTCCGGCT < 1:7652169/58‑1 CTGTTGTGCCAGGAATTCGTCTTCAACAATGATGACTTTCACAATATCACTCCGGCTCAAAGCAATAACG < 1:3057003/70‑1 TGTTGTGCCAGGAATTCGTCTTCAACAATGATGACTTTCACAATATCACTCCGGCTCAAAG > 1:3699239/1‑61 TGTTGTGCCAGGAATTCGTCTTCAACAATGATGACTTTCACAATATCACTCCGGCTCAAAG > 1:2217746/1‑61 TGTTGTGCCAGGAATTCGTCTTCAACAATGATGACTTTCACAATATCACTCC < 1:4652807/52‑1 CGCCTCACAGGCTACGTTATTGCTTTGAGCCGGAGTGATATTGTGAAAGTCATCATTGTTGAAGACGAATTCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2505787‑2505861‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcctgTTGTGCCAGGAATTCGTCTTCAACAATGATGACTTTCACAATATCACTCCGGCTCAAAGCAATAACG < W3110S.gb/2505867‑2505801 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |