| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2506069 = | 88 (1.080) | 5 (0.070) | 3/88 | NT | 6.6% | coding (241/735 nt) | ypdB | predicted response regulator in two‑component system withYpdA |
| ? | W3110S.gb | 2506092 = | 63 (0.860) | coding (264/735 nt) | ypdB | predicted response regulator in two‑component system withYpdA | |||||
CTGATACGGTTTGAGAATGTAGTCAAACGCCTCCAGTTCAAACGCTTCTACCGCATGTTCTTTCCACGCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/2506140‑2506069‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggtAGAAGCGTTTGAACTGGAGGCGTTTGACTACATTCTCAAACCGTATCAGGAGTCACGTATTACCGGGATG > W3110S.gb/2506092‑2506161 CTGATACGGTTTGAGAATGTAGTCAAACGCCTCCAGTTCAAACGCTTCTACCGCATGTTCTTTCCACGCGG > 1:2710396/1‑71CTGATACGGTTTGAGAATGTAGTCAAACGCCTCCAGTTCAAACGCTTCTACCGCATGTTCTTTCCACGCGG < 1:7444917/71‑1CTGATACGGTTTGAGAATGTAGTCAAACGCCTCCAGTTCAAACGCTTCTACCGCATGTTCTTTCCACGCGG > 1:3464293/1‑71CTGATACGGTTTGAGAATGTAGTCAAACGCCTCCAGTTCAAACGCTTCTACCGCATGTTCTTTCCACGCG < 1:7067845/70‑1 TGATACGGTTTGAGAATGTAGTCAAACGCCTCCAGTTCAAACGCTTCTACCGCATGTTCTTTCCACGCGGT > 1:813057/1‑71 TGATACGGTTTGAGAATGTAGTCAAACGCCTCCAGTTCAAACGCTTCTACCGCATGTTCTTTCCACGCGGT > 1:53026/1‑71 GATACGGTTTGAGAATGTAGTCAAACGCCTCCAGTTCAAACGCTTCTACCGCATGTTCTTTCCACGCGGT > 1:2001347/1‑70 GTAGTCAAACGCCTCCAGTTCAAACGCTTCTACCGCATGTTCTTTCCACGCGGT < 1:3643553/54‑1 TCCAGTTCAAACGCTTCTACCGCATGTTCTTTCCACG < 1:997522/37‑1 TCCAGTTCAAACGCTTCTACCGCATGTTCTTTCCACG < 1:4323600/37‑1 TCCAGTTCAAACGCTTCTACCGCATGTTCTTTCCACG < 1:3212185/37‑1 CCAGTTCAAACGCTTCTACCGCATGTTCTTTCCACG < 1:4335997/36‑1 TACCGCATGTTCTTTCCACGCGGTAGAAGCGTTTGAACTGGAGGCGTTT < 1:3616470/49‑1 TACCGCATGTTCTTTCCACGCGGTAGAAGCGTTTGAACTGGAGGCGTTT < 1:1892366/49‑1 CCGCATGTTCTTTCCACGCGGTAGAAGCGTTTGAACTGGAGGCGTTTGACTACATTCTCAAACCGTATCAG > 1:4169938/1‑71 GTTCTTTCCACGCGGTAGAAGCGTTTGAACTGGAGGCG < 1:452640/38‑1 GTTCTTTCCACGCGGTAGAAGCGTTTGAACTGGAGGCG < 1:267110/38‑1 GCGGTAGAAGCGTTTGAACTGGAGGCGTTTGACTACATTCTCAAACCGTATCAGGAGTCACGTATTACCGG > 1:890703/1‑71 GCGGTAGAAGCGTTTGAACTGGAGGCGTTTGACTACAT > 1:3088154/1‑38 CGGTAGAAGCGTTTGAACTGGAGGCGTTTGACTACATTCTCAAACCGTATCAGGAGTCACGTATTACCGGG < 1:4013213/71‑1 GGTAGAAGCGTTTGAGCTGGAGGCGTTTGACTACATTCTCAAACCGTATCAGGAGTCACGTATTACCGGGA < 1:7623677/71‑1 GGTAGAAGCGTTTGAACTGGAGGCGTTTGACTACATTCTCAAACCGTATCAGGAGTCACGTATTACCGGGA > 1:5866505/1‑71 GTAGAAGCGTTTGAACTGGAGGCGTTTGACTACATTCTCAAACCGTATCAGGAGTCACGTATTACCGGGAT < 1:3830448/71‑1 GTAGAAGCGTTTGAACTGGAGGCGTTTGACTACATTCTCAAACCGTATCAGGAGTCACGTATTACCGGGAT < 1:3364685/71‑1 TAGAAGCGTTTGAACTGGAGGCGTTTGACTACATTCTCAAACCGTATCAGGAGTCACGTATTACCGGGATG < 1:445781/71‑1 CTGATACGGTTTGAGAATGTAGTCAAACGCCTCCAGTTCAAACGCTTCTACCGCATGTTCTTTCCACGCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/2506140‑2506069‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggtAGAAGCGTTTGAACTGGAGGCGTTTGACTACATTCTCAAACCGTATCAGGAGTCACGTATTACCGGGATG > W3110S.gb/2506092‑2506161 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |