New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	2817848 =	57 (0.700)	6 (0.070)	4/98	NT	7.2%	intergenic (‑46/+189)	csrA/alaS	pleiotropic regulatory protein for carbon source metabolism/alanyl‑tRNA synthetase
	?	W3110S.gb	2817873 =	97 (1.190)					intergenic (‑71/+164)	csrA/alaS	pleiotropic regulatory protein for carbon source metabolism/alanyl‑tRNA synthetase

TTTTTGGCGTTATATGATGGATAATGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/2817876‑2817848 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGCAT  >  W3110S.gb/2817873‑2817918                                                                             TTTTTGGCGTTATATGATGGATAATGCCGAAGAGTAAGCAATGACAAAC                            <  1:4339970/49‑1    TTGGCGTTATATGATGGATAATGCCGAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGC    <  1:142656/70‑1    TTGGCGTTATATGATGGATAATGCCGAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGC    >  1:1995392/1‑70    TTGGCGTTATATGATGGATAATGCCGAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGC    <  1:3013489/70‑1    TTGGCGTTATATGATGGATAATGCCGAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGC    <  1:7790280/70‑1      GGCGTTATATGATGGATAATGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGCAT  >  1:6867517/1‑70                                                                             TTTTTGGCGTTATATGATGGATAATGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/2817876‑2817848 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGCAT  >  W3110S.gb/2817873‑2817918

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.